Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MSH3P20585 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH3P20585 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH3P20585 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
MSH3P20585 AC010141.2-201ENST00000452426 721 ntBASIC20.85■□□□□ 0.93
MSH3P20585 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH3P20585 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH3P20585 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSH3P20585 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH3P20585 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH3P20585 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH3P20585 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH3P20585 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH3P20585 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH3P20585 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH3P20585 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH3P20585 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
MSH3P20585 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.83■□□□□ 0.93
MSH3P20585 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MSH3P20585 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.83■□□□□ 0.93
MSH3P20585 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH3P20585 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH3P20585 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
MSH3P20585 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH3P20585 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 AC026310.3-201ENST00000625186 2373 ntBASIC20.82■□□□□ 0.92
MSH3P20585 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
MSH3P20585 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.82■□□□□ 0.92
MSH3P20585 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH3P20585 AC137761.2-201ENST00000561729 223 ntBASIC20.82■□□□□ 0.92
MSH3P20585 AC145350.3-201ENST00000569033 163 ntBASIC20.82■□□□□ 0.92
MSH3P20585 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.82■□□□□ 0.92
MSH3P20585 AC120498.10-201ENST00000621827 505 ntBASIC20.82■□□□□ 0.92
MSH3P20585 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH3P20585 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
MSH3P20585 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
MSH3P20585 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH3P20585 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.81■□□□□ 0.92
MSH3P20585 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH3P20585 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 POU5F1P4-201ENST00000413175 1085 ntBASIC20.81■□□□□ 0.92
MSH3P20585 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.81■□□□□ 0.92
MSH3P20585 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.81■□□□□ 0.92
MSH3P20585 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
MSH3P20585 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH3P20585 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH3P20585 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH3P20585 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH3P20585 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.8■□□□□ 0.92
MSH3P20585 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH3P20585 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH3P20585 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms