Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCANP13611 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.96■■□□□ 1.11
VCANP13611 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.96■■□□□ 1.11
VCANP13611 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.96■■□□□ 1.11
VCANP13611 AC005363.2-201ENST00000618631 242 ntBASIC21.96■■□□□ 1.11
VCANP13611 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCANP13611 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VCANP13611 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
VCANP13611 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
VCANP13611 LSM12P1-201ENST00000411836 588 ntBASIC21.95■■□□□ 1.1
VCANP13611 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.95■■□□□ 1.1
VCANP13611 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
VCANP13611 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VCANP13611 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCANP13611 DUX4L26-201ENST00000489078 1255 ntBASIC21.95■■□□□ 1.1
VCANP13611 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.95■■□□□ 1.1
VCANP13611 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCANP13611 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.95■■□□□ 1.1
VCANP13611 AL591742.1-201ENST00000604433 565 ntBASIC21.95■■□□□ 1.1
VCANP13611 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.95■■□□□ 1.1
VCANP13611 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.95■■□□□ 1.1
VCANP13611 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
VCANP13611 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.95■■□□□ 1.1
VCANP13611 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VCANP13611 AC026471.5-201ENST00000615068 467 ntBASIC21.95■■□□□ 1.1
VCANP13611 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.94■■□□□ 1.1
VCANP13611 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
VCANP13611 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.94■■□□□ 1.1
VCANP13611 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VCANP13611 AL358472.4-201ENST00000633140 710 ntBASIC21.93■■□□□ 1.1
VCANP13611 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 RBM17P2-201ENST00000616397 1405 ntBASIC21.93■■□□□ 1.1
VCANP13611 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.93■■□□□ 1.1
VCANP13611 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.93■■□□□ 1.1
VCANP13611 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.93■■□□□ 1.1
VCANP13611 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VCANP13611 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 KRT8P9-201ENST00000558927 1449 ntBASIC21.92■■□□□ 1.1
VCANP13611 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
VCANP13611 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.92■■□□□ 1.1
VCANP13611 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.92■■□□□ 1.1
VCANP13611 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
VCANP13611 AC133681.1-201ENST00000465482 601 ntBASIC21.92■■□□□ 1.1
VCANP13611 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
VCANP13611 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VCANP13611 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.91■■□□□ 1.1
VCANP13611 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VCANP13611 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 AC239809.2-201ENST00000415381 517 ntBASIC21.91■■□□□ 1.1
VCANP13611 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
VCANP13611 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.91■■□□□ 1.1
VCANP13611 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.91■■□□□ 1.1
VCANP13611 AC113410.3-201ENST00000623366 203 ntBASIC21.91■■□□□ 1.1
VCANP13611 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
VCANP13611 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
VCANP13611 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.91■■□□□ 1.1
VCANP13611 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.91■■□□□ 1.1
VCANP13611 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
VCANP13611 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VCANP13611 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
VCANP13611 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.9■■□□□ 1.1
VCANP13611 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
VCANP13611 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.9■■□□□ 1.1
VCANP13611 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.9■■□□□ 1.1
VCANP13611 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
VCANP13611 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms