Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SDC3O75056 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDC3O75056 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.54■□□□□ 0.88
SDC3O75056 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.54■□□□□ 0.88
SDC3O75056 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.54■□□□□ 0.88
SDC3O75056 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SDC3O75056 AC091874.3-201ENST00000512672 1195 ntBASIC20.54■□□□□ 0.88
SDC3O75056 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SDC3O75056 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.54■□□□□ 0.88
SDC3O75056 AC243732.1-201ENST00000612648 864 ntBASIC20.54■□□□□ 0.88
SDC3O75056 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SDC3O75056 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDC3O75056 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDC3O75056 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SDC3O75056 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.54■□□□□ 0.88
SDC3O75056 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.53■□□□□ 0.88
SDC3O75056 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.53■□□□□ 0.88
SDC3O75056 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.53■□□□□ 0.88
SDC3O75056 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 AL162412.1-201ENST00000567129 965 ntBASIC20.53■□□□□ 0.88
SDC3O75056 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.53■□□□□ 0.88
SDC3O75056 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SDC3O75056 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.53■□□□□ 0.88
SDC3O75056 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SDC3O75056 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.52■□□□□ 0.88
SDC3O75056 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.52■□□□□ 0.88
SDC3O75056 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SDC3O75056 ESRRAP1-201ENST00000400596 1257 ntBASIC20.52■□□□□ 0.88
SDC3O75056 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.52■□□□□ 0.88
SDC3O75056 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.52■□□□□ 0.88
SDC3O75056 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.52■□□□□ 0.88
SDC3O75056 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.52■□□□□ 0.88
SDC3O75056 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SDC3O75056 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.52■□□□□ 0.88
SDC3O75056 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SDC3O75056 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SDC3O75056 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SDC3O75056 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SDC3O75056 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.51■□□□□ 0.87
SDC3O75056 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.51■□□□□ 0.87
SDC3O75056 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.51■□□□□ 0.87
SDC3O75056 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SDC3O75056 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.51■□□□□ 0.87
SDC3O75056 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.51■□□□□ 0.87
SDC3O75056 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.51■□□□□ 0.87
SDC3O75056 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.51■□□□□ 0.87
SDC3O75056 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.51■□□□□ 0.87
SDC3O75056 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SDC3O75056 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SDC3O75056 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SDC3O75056 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.5■□□□□ 0.87
SDC3O75056 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
SDC3O75056 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.5■□□□□ 0.87
SDC3O75056 RPS2P52-201ENST00000469610 820 ntBASIC20.5■□□□□ 0.87
SDC3O75056 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.5■□□□□ 0.87
SDC3O75056 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SDC3O75056 AC010542.4-201ENST00000563151 1910 ntBASIC20.5■□□□□ 0.87
SDC3O75056 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SDC3O75056 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.5■□□□□ 0.87
SDC3O75056 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
SDC3O75056 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
SDC3O75056 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SDC3O75056 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SDC3O75056 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.49■□□□□ 0.87
SDC3O75056 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SDC3O75056 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 C11orf96-202ENST00000528572 1834 ntBASIC20.49■□□□□ 0.87
SDC3O75056 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SDC3O75056 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 LSM12P1-201ENST00000411836 588 ntBASIC20.49■□□□□ 0.87
SDC3O75056 AL355472.2-201ENST00000422958 438 ntBASIC20.49■□□□□ 0.87
SDC3O75056 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SDC3O75056 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.49■□□□□ 0.87
SDC3O75056 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms