Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
PHGDHO43175 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.84■□□□□ 0.93
PHGDHO43175 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PHGDHO43175 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PHGDHO43175 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.84■□□□□ 0.93
PHGDHO43175 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.84■□□□□ 0.93
PHGDHO43175 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.84■□□□□ 0.93
PHGDHO43175 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.84■□□□□ 0.93
PHGDHO43175 AF213884.3-201ENST00000563833 479 ntBASIC20.84■□□□□ 0.93
PHGDHO43175 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PHGDHO43175 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PHGDHO43175 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PHGDHO43175 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.84■□□□□ 0.93
PHGDHO43175 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PHGDHO43175 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PHGDHO43175 AC005224.4-201ENST00000583262 1652 ntBASIC20.83■□□□□ 0.93
PHGDHO43175 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PHGDHO43175 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PHGDHO43175 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.83■□□□□ 0.93
PHGDHO43175 EDA-201ENST00000338901 1233 ntBASIC20.83■□□□□ 0.93
PHGDHO43175 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PHGDHO43175 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.83■□□□□ 0.92
PHGDHO43175 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.83■□□□□ 0.92
PHGDHO43175 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.83■□□□□ 0.92
PHGDHO43175 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PHGDHO43175 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.83■□□□□ 0.92
PHGDHO43175 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
PHGDHO43175 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PHGDHO43175 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PHGDHO43175 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.82■□□□□ 0.92
PHGDHO43175 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PHGDHO43175 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PHGDHO43175 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.82■□□□□ 0.92
PHGDHO43175 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PHGDHO43175 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PHGDHO43175 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PHGDHO43175 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PHGDHO43175 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.81■□□□□ 0.92
PHGDHO43175 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PHGDHO43175 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.81■□□□□ 0.92
PHGDHO43175 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.81■□□□□ 0.92
PHGDHO43175 MIR939-201ENST00000401314 82 ntBASIC20.81■□□□□ 0.92
PHGDHO43175 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PHGDHO43175 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.81■□□□□ 0.92
PHGDHO43175 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.81■□□□□ 0.92
PHGDHO43175 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.81■□□□□ 0.92
PHGDHO43175 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PHGDHO43175 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PHGDHO43175 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.81■□□□□ 0.92
PHGDHO43175 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PHGDHO43175 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PHGDHO43175 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 BX005040.4-201ENST00000637145 1518 ntBASIC20.8■□□□□ 0.92
PHGDHO43175 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PHGDHO43175 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.8■□□□□ 0.92
PHGDHO43175 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.8■□□□□ 0.92
PHGDHO43175 AL355001.2-201ENST00000620617 1191 ntBASIC20.8■□□□□ 0.92
PHGDHO43175 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 RASA4CP-201ENST00000424092 1398 ntBASIC20.8■□□□□ 0.92
PHGDHO43175 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PHGDHO43175 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.8■□□□□ 0.92
PHGDHO43175 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.79■□□□□ 0.92
PHGDHO43175 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 LINC01006-201ENST00000333319 2292 ntBASIC20.79■□□□□ 0.92
PHGDHO43175 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 MIR572-201ENST00000384983 95 ntBASIC20.79■□□□□ 0.92
PHGDHO43175 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.79■□□□□ 0.92
PHGDHO43175 AL031432.3-201ENST00000607698 485 ntBASIC20.79■□□□□ 0.92
PHGDHO43175 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.79■□□□□ 0.92
PHGDHO43175 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.79■□□□□ 0.92
PHGDHO43175 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
PHGDHO43175 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.79■□□□□ 0.92
PHGDHO43175 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
PHGDHO43175 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PHGDHO43175 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PHGDHO43175 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.78■□□□□ 0.92
PHGDHO43175 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PHGDHO43175 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms