Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GPALPP1-207ENST00000611650 899 ntBASIC16.52■□□□□ 0.24
COL6A5A8TX70 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COL6A5A8TX70 TERF1P1-201ENST00000311003 1181 ntBASIC16.52■□□□□ 0.23
COL6A5A8TX70 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A5A8TX70 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A5A8TX70 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A5A8TX70 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.52■□□□□ 0.23
COL6A5A8TX70 AC087388.1-201ENST00000571370 1112 ntBASIC16.52■□□□□ 0.23
COL6A5A8TX70 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.52■□□□□ 0.23
COL6A5A8TX70 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 DUX4L26-201ENST00000489078 1255 ntBASIC16.51■□□□□ 0.23
COL6A5A8TX70 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
COL6A5A8TX70 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A5A8TX70 AC022211.4-201ENST00000625094 2161 ntBASIC16.51■□□□□ 0.23
COL6A5A8TX70 AP004607.7-201ENST00000527152 1677 ntBASIC16.51■□□□□ 0.23
COL6A5A8TX70 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 OR7E47P-201ENST00000546390 1422 ntBASIC16.5■□□□□ 0.23
COL6A5A8TX70 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL6A5A8TX70 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 AC142086.6-201ENST00000621154 1765 ntBASIC16.5■□□□□ 0.23
COL6A5A8TX70 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A5A8TX70 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 KRT18P48-201ENST00000434763 852 ntBASIC16.49■□□□□ 0.23
COL6A5A8TX70 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 AL358472.4-201ENST00000633140 710 ntBASIC16.49■□□□□ 0.23
COL6A5A8TX70 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 MMP23A-201ENST00000234610 1017 ntBASIC16.49■□□□□ 0.23
COL6A5A8TX70 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.49■□□□□ 0.23
COL6A5A8TX70 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 WWOX-216ENST00000569818 525 ntBASIC16.49■□□□□ 0.23
COL6A5A8TX70 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.49■□□□□ 0.23
COL6A5A8TX70 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL6A5A8TX70 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms