Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
PTPN22Q9Y2R2 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.13■■■□□ 2.57
PTPN22Q9Y2R2 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PTPN22Q9Y2R2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
PTPN22Q9Y2R2 AC108673.1-201ENST00000510422 1159 ntBASIC31.11■■■□□ 2.57
PTPN22Q9Y2R2 MIR6090-201ENST00000622481 60 ntBASIC31.11■■■□□ 2.57
PTPN22Q9Y2R2 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.1■■■□□ 2.57
PTPN22Q9Y2R2 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PTPN22Q9Y2R2 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PTPN22Q9Y2R2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
PTPN22Q9Y2R2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PTPN22Q9Y2R2 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.08■■■□□ 2.57
PTPN22Q9Y2R2 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PTPN22Q9Y2R2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
PTPN22Q9Y2R2 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PTPN22Q9Y2R2 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.04■■■□□ 2.56
PTPN22Q9Y2R2 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PTPN22Q9Y2R2 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PTPN22Q9Y2R2 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PTPN22Q9Y2R2 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
PTPN22Q9Y2R2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.02■■■□□ 2.56
PTPN22Q9Y2R2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
PTPN22Q9Y2R2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.99■■■□□ 2.55
PTPN22Q9Y2R2 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
PTPN22Q9Y2R2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
PTPN22Q9Y2R2 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
PTPN22Q9Y2R2 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
PTPN22Q9Y2R2 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.97■■■□□ 2.55
PTPN22Q9Y2R2 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.97■■■□□ 2.55
PTPN22Q9Y2R2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
PTPN22Q9Y2R2 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.94■■■□□ 2.54
PTPN22Q9Y2R2 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
PTPN22Q9Y2R2 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.93■■■□□ 2.54
PTPN22Q9Y2R2 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PTPN22Q9Y2R2 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PTPN22Q9Y2R2 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
PTPN22Q9Y2R2 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
PTPN22Q9Y2R2 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
PTPN22Q9Y2R2 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
PTPN22Q9Y2R2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PTPN22Q9Y2R2 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
PTPN22Q9Y2R2 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PTPN22Q9Y2R2 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
PTPN22Q9Y2R2 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.89■■■□□ 2.54
PTPN22Q9Y2R2 RARRES2P2-201ENST00000394842 485 ntBASIC30.88■■■□□ 2.53
PTPN22Q9Y2R2 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.87■■■□□ 2.53
PTPN22Q9Y2R2 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.86■■■□□ 2.53
PTPN22Q9Y2R2 ABHD17AP5-201ENST00000580133 923 ntBASIC30.86■■■□□ 2.53
PTPN22Q9Y2R2 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
PTPN22Q9Y2R2 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
PTPN22Q9Y2R2 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
PTPN22Q9Y2R2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PTPN22Q9Y2R2 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
PTPN22Q9Y2R2 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.81■■■□□ 2.52
PTPN22Q9Y2R2 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.81■■■□□ 2.52
PTPN22Q9Y2R2 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.8■■■□□ 2.52
PTPN22Q9Y2R2 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
PTPN22Q9Y2R2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.8■■■□□ 2.52
PTPN22Q9Y2R2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
PTPN22Q9Y2R2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.79■■■□□ 2.52
PTPN22Q9Y2R2 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L13-201ENST00000554103 1267 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L15-201ENST00000611059 1267 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L23-201ENST00000615195 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L24-201ENST00000617576 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L22-201ENST00000618238 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L20-201ENST00000619712 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L21-201ENST00000622058 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L10-201ENST00000622460 1267 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 DUX4L25-201ENST00000624915 1269 ntBASIC30.78■■■□□ 2.52
PTPN22Q9Y2R2 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.77■■■□□ 2.52
PTPN22Q9Y2R2 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
PTPN22Q9Y2R2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.52
PTPN22Q9Y2R2 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PTPN22Q9Y2R2 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PTPN22Q9Y2R2 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
PTPN22Q9Y2R2 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.76■■■□□ 2.51
PTPN22Q9Y2R2 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
PTPN22Q9Y2R2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
PTPN22Q9Y2R2 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.73■■■□□ 2.51
PTPN22Q9Y2R2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
PTPN22Q9Y2R2 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
PTPN22Q9Y2R2 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.72■■■□□ 2.51
PTPN22Q9Y2R2 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.72■■■□□ 2.51
PTPN22Q9Y2R2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PTPN22Q9Y2R2 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.7■■■□□ 2.51
PTPN22Q9Y2R2 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
PTPN22Q9Y2R2 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PTPN22Q9Y2R2 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.69■■■□□ 2.5
PTPN22Q9Y2R2 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PTPN22Q9Y2R2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PTPN22Q9Y2R2 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
PTPN22Q9Y2R2 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms