Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRAV17A0A0B4J275 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TRAV17A0A0B4J275 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 AC021231.2-201ENST00000594613 730 ntBASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRAV17A0A0B4J275 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TRAV17A0A0B4J275 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 MIR6090-201ENST00000622481 60 ntBASIC24.44■■□□□ 1.5
TRAV17A0A0B4J275 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRAV17A0A0B4J275 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TRAV17A0A0B4J275 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
TRAV17A0A0B4J275 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRAV17A0A0B4J275 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRAV17A0A0B4J275 AC120057.4-201ENST00000624722 1615 ntBASIC24.37■■□□□ 1.49
TRAV17A0A0B4J275 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TRAV17A0A0B4J275 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.36■■□□□ 1.49
TRAV17A0A0B4J275 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.34■■□□□ 1.49
TRAV17A0A0B4J275 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TRAV17A0A0B4J275 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
TRAV17A0A0B4J275 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
TRAV17A0A0B4J275 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRAV17A0A0B4J275 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
TRAV17A0A0B4J275 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.3■■□□□ 1.48
TRAV17A0A0B4J275 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 LINC01971-201ENST00000617888 1048 ntBASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.27■■□□□ 1.48
TRAV17A0A0B4J275 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 MIR639-201ENST00000384974 98 ntBASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR4449-201ENST00000578365 66 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR3648-2-201ENST00000581792 180 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L11-201ENST00000611504 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L12-201ENST00000614593 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR3648-1-201ENST00000615959 180 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L14-201ENST00000621227 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.19■■□□□ 1.46
TRAV17A0A0B4J275 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TRAV17A0A0B4J275 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.18■■□□□ 1.46
TRAV17A0A0B4J275 AC016575.1-201ENST00000607026 382 ntBASIC24.18■■□□□ 1.46
TRAV17A0A0B4J275 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms