Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TRAV17A0A0B4J275 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TRAV17A0A0B4J275 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TRAV17A0A0B4J275 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TRAV17A0A0B4J275 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TRAV17A0A0B4J275 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 AC021231.2-201ENST00000594613 730 ntBASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
TRAV17A0A0B4J275 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TRAV17A0A0B4J275 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TRAV17A0A0B4J275 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TRAV17A0A0B4J275 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TRAV17A0A0B4J275 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
TRAV17A0A0B4J275 MIR6090-201ENST00000622481 60 ntBASIC24.44■■□□□ 1.5
TRAV17A0A0B4J275 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TRAV17A0A0B4J275 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TRAV17A0A0B4J275 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
TRAV17A0A0B4J275 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TRAV17A0A0B4J275 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TRAV17A0A0B4J275 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
TRAV17A0A0B4J275 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TRAV17A0A0B4J275 AC120057.4-201ENST00000624722 1615 ntBASIC24.37■■□□□ 1.49
TRAV17A0A0B4J275 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TRAV17A0A0B4J275 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.36■■□□□ 1.49
TRAV17A0A0B4J275 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.34■■□□□ 1.49
TRAV17A0A0B4J275 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
TRAV17A0A0B4J275 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
TRAV17A0A0B4J275 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
TRAV17A0A0B4J275 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
TRAV17A0A0B4J275 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.31■■□□□ 1.48
TRAV17A0A0B4J275 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
TRAV17A0A0B4J275 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.3■■□□□ 1.48
TRAV17A0A0B4J275 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC24.29■■□□□ 1.48
TRAV17A0A0B4J275 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 LINC01971-201ENST00000617888 1048 ntBASIC24.28■■□□□ 1.48
TRAV17A0A0B4J275 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.27■■□□□ 1.48
TRAV17A0A0B4J275 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 RPS2-202ENST00000526522 924 ntTSL 2 BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
TRAV17A0A0B4J275 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 MIR639-201ENST00000384974 98 ntBASIC24.25■■□□□ 1.47
TRAV17A0A0B4J275 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
TRAV17A0A0B4J275 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TRAV17A0A0B4J275 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR4449-201ENST00000578365 66 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR3648-2-201ENST00000581792 180 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L11-201ENST00000611504 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L12-201ENST00000614593 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 MIR3648-1-201ENST00000615959 180 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 DUX4L14-201ENST00000621227 1267 ntBASIC24.22■■□□□ 1.47
TRAV17A0A0B4J275 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
TRAV17A0A0B4J275 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TRAV17A0A0B4J275 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.19■■□□□ 1.46
TRAV17A0A0B4J275 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TRAV17A0A0B4J275 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.18■■□□□ 1.46
TRAV17A0A0B4J275 AC016575.1-201ENST00000607026 382 ntBASIC24.18■■□□□ 1.46
TRAV17A0A0B4J275 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.17■■□□□ 1.46
TRAV17A0A0B4J275 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TRAV17A0A0B4J275 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms