Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 AC079140.4-201ENST00000507448 529 ntBASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 AC005224.4-201ENST00000583262 1652 ntBASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PCDHB3Q9Y5E6 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PCDHB3Q9Y5E6 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 BID-214ENST00000617586 542 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDHB3Q9Y5E6 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDHB3Q9Y5E6 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDHB3Q9Y5E6 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 AC026185.1-201ENST00000445748 174 ntBASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 AC073111.5-205ENST00000641717 521 ntBASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PCDHB3Q9Y5E6 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 KRT18P11-201ENST00000435214 1283 ntBASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms