Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.87■■□□□ 1.09
DDX56Q9NY93 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.87■■□□□ 1.09
DDX56Q9NY93 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
DDX56Q9NY93 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX56Q9NY93 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DDX56Q9NY93 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DDX56Q9NY93 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DDX56Q9NY93 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX56Q9NY93 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.86■■□□□ 1.09
DDX56Q9NY93 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.86■■□□□ 1.09
DDX56Q9NY93 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
DDX56Q9NY93 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
DDX56Q9NY93 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 AC142381.2-201ENST00000566120 298 ntBASIC21.85■■□□□ 1.09
DDX56Q9NY93 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 AL358852.1-201ENST00000623174 1268 ntBASIC21.85■■□□□ 1.09
DDX56Q9NY93 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DDX56Q9NY93 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
DDX56Q9NY93 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DDX56Q9NY93 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
DDX56Q9NY93 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 EEF1DP3-203ENST00000566025 782 ntBASIC21.83■■□□□ 1.09
DDX56Q9NY93 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 TPRG1LP1-201ENST00000598702 760 ntBASIC21.83■■□□□ 1.09
DDX56Q9NY93 AC053503.5-201ENST00000601508 636 ntBASIC21.83■■□□□ 1.09
DDX56Q9NY93 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX56Q9NY93 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX56Q9NY93 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.83■■□□□ 1.08
DDX56Q9NY93 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
DDX56Q9NY93 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX56Q9NY93 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.83■■□□□ 1.08
DDX56Q9NY93 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX56Q9NY93 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.82■■□□□ 1.08
DDX56Q9NY93 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX56Q9NY93 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
DDX56Q9NY93 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms