Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VTA1Q9NP79 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.65■■□□□ 1.38
VTA1Q9NP79 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.65■■□□□ 1.38
VTA1Q9NP79 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
VTA1Q9NP79 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
VTA1Q9NP79 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.65■■□□□ 1.38
VTA1Q9NP79 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
VTA1Q9NP79 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
VTA1Q9NP79 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.64■■□□□ 1.38
VTA1Q9NP79 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
VTA1Q9NP79 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
VTA1Q9NP79 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.64■■□□□ 1.38
VTA1Q9NP79 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.64■■□□□ 1.37
VTA1Q9NP79 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.64■■□□□ 1.37
VTA1Q9NP79 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
VTA1Q9NP79 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.64■■□□□ 1.37
VTA1Q9NP79 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
VTA1Q9NP79 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.64■■□□□ 1.37
VTA1Q9NP79 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VTA1Q9NP79 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VTA1Q9NP79 PRORSD1P-201ENST00000295112 541 ntBASIC23.63■■□□□ 1.37
VTA1Q9NP79 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
VTA1Q9NP79 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.63■■□□□ 1.37
VTA1Q9NP79 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
VTA1Q9NP79 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VTA1Q9NP79 AC026471.6-201ENST00000622954 1905 ntBASIC23.63■■□□□ 1.37
VTA1Q9NP79 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 LSM12P1-201ENST00000411836 588 ntBASIC23.62■■□□□ 1.37
VTA1Q9NP79 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.62■■□□□ 1.37
VTA1Q9NP79 CDV3P1-201ENST00000471403 739 ntBASIC23.62■■□□□ 1.37
VTA1Q9NP79 AC100791.3-201ENST00000617619 330 ntBASIC23.62■■□□□ 1.37
VTA1Q9NP79 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
VTA1Q9NP79 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
VTA1Q9NP79 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
VTA1Q9NP79 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VTA1Q9NP79 C1orf229-201ENST00000623686 2258 ntBASIC23.61■■□□□ 1.37
VTA1Q9NP79 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 ESRRAP1-201ENST00000400596 1257 ntBASIC23.61■■□□□ 1.37
VTA1Q9NP79 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.61■■□□□ 1.37
VTA1Q9NP79 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VTA1Q9NP79 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
VTA1Q9NP79 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VTA1Q9NP79 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VTA1Q9NP79 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VTA1Q9NP79 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VTA1Q9NP79 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
VTA1Q9NP79 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VTA1Q9NP79 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 AC010542.4-201ENST00000563151 1910 ntBASIC23.59■■□□□ 1.37
VTA1Q9NP79 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
VTA1Q9NP79 C11orf96-202ENST00000528572 1834 ntBASIC23.59■■□□□ 1.37
VTA1Q9NP79 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
VTA1Q9NP79 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
VTA1Q9NP79 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
VTA1Q9NP79 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
VTA1Q9NP79 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
VTA1Q9NP79 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms