Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VCX3AQ9NNX9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VCX3AQ9NNX9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
VCX3AQ9NNX9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCX3AQ9NNX9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 AC005082.1-201ENST00000413042 2259 ntBASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCX3AQ9NNX9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 TNXA-203ENST00000507684 2038 ntBASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCX3AQ9NNX9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCX3AQ9NNX9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms