Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRCH3Q96II8 AL355472.2-201ENST00000422958 438 ntBASIC22.89■■□□□ 1.25
LRCH3Q96II8 TPM4P1-201ENST00000436100 807 ntBASIC22.89■■□□□ 1.25
LRCH3Q96II8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.89■■□□□ 1.25
LRCH3Q96II8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRCH3Q96II8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.89■■□□□ 1.25
LRCH3Q96II8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRCH3Q96II8 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
LRCH3Q96II8 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
LRCH3Q96II8 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRCH3Q96II8 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
LRCH3Q96II8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.89■■□□□ 1.25
LRCH3Q96II8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 AC092865.7-201ENST00000641832 219 ntBASIC22.88■■□□□ 1.25
LRCH3Q96II8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
LRCH3Q96II8 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.88■■□□□ 1.25
LRCH3Q96II8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 EEF1DP3-203ENST00000566025 782 ntBASIC22.87■■□□□ 1.25
LRCH3Q96II8 AL121894.2-201ENST00000602977 491 ntBASIC22.87■■□□□ 1.25
LRCH3Q96II8 AL353708.3-201ENST00000610272 989 ntBASIC22.87■■□□□ 1.25
LRCH3Q96II8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 AC092368.3-202ENST00000574180 1591 ntBASIC22.87■■□□□ 1.25
LRCH3Q96II8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.87■■□□□ 1.25
LRCH3Q96II8 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
LRCH3Q96II8 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 SOX15-203ENST00000570788 1093 ntBASIC22.86■■□□□ 1.25
LRCH3Q96II8 AC113410.3-201ENST00000623366 203 ntBASIC22.86■■□□□ 1.25
LRCH3Q96II8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.86■■□□□ 1.25
LRCH3Q96II8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
LRCH3Q96II8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRCH3Q96II8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.85■■□□□ 1.25
LRCH3Q96II8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
LRCH3Q96II8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.85■■□□□ 1.25
LRCH3Q96II8 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.85■■□□□ 1.25
LRCH3Q96II8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.85■■□□□ 1.25
LRCH3Q96II8 AP001412.1-201ENST00000608405 714 ntBASIC22.85■■□□□ 1.25
LRCH3Q96II8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRCH3Q96II8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
LRCH3Q96II8 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
LRCH3Q96II8 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
LRCH3Q96II8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.84■■□□□ 1.25
LRCH3Q96II8 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.84■■□□□ 1.25
LRCH3Q96II8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.84■■□□□ 1.25
LRCH3Q96II8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.84■■□□□ 1.25
LRCH3Q96II8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
LRCH3Q96II8 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
LRCH3Q96II8 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.83■■□□□ 1.25
LRCH3Q96II8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
LRCH3Q96II8 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
LRCH3Q96II8 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.83■■□□□ 1.25
LRCH3Q96II8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.83■■□□□ 1.25
LRCH3Q96II8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms