Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
RTF1Q92541 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
RTF1Q92541 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC27.5■■□□□ 1.99
RTF1Q92541 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
RTF1Q92541 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RTF1Q92541 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.49■■□□□ 1.99
RTF1Q92541 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RTF1Q92541 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC27.49■■□□□ 1.99
RTF1Q92541 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
RTF1Q92541 SLC29A4P1-201ENST00000398760 971 ntBASIC27.49■■□□□ 1.99
RTF1Q92541 PLLP-204ENST00000569059 665 ntTSL 3 BASIC27.49■■□□□ 1.99
RTF1Q92541 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC27.49■■□□□ 1.99
RTF1Q92541 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC27.49■■□□□ 1.99
RTF1Q92541 GAMT-205ENST00000640762 751 ntTSL 5 BASIC27.49■■□□□ 1.99
RTF1Q92541 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC27.49■■□□□ 1.99
RTF1Q92541 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RTF1Q92541 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC27.48■■□□□ 1.99
RTF1Q92541 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC27.48■■□□□ 1.99
RTF1Q92541 GUSBP6-202ENST00000438529 1198 ntBASIC27.48■■□□□ 1.99
RTF1Q92541 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.48■■□□□ 1.99
RTF1Q92541 AC243732.1-201ENST00000612648 864 ntBASIC27.48■■□□□ 1.99
RTF1Q92541 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
RTF1Q92541 C11orf96-202ENST00000528572 1834 ntBASIC27.48■■□□□ 1.99
RTF1Q92541 NARF-205ENST00000412079 1760 ntTSL 5 BASIC27.48■■□□□ 1.99
RTF1Q92541 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
RTF1Q92541 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC27.47■■□□□ 1.99
RTF1Q92541 ECEL1P1-201ENST00000373592 1742 ntBASIC27.47■■□□□ 1.99
RTF1Q92541 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC27.47■■□□□ 1.99
RTF1Q92541 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
RTF1Q92541 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
RTF1Q92541 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
RTF1Q92541 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC27.46■■□□□ 1.99
RTF1Q92541 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC27.46■■□□□ 1.99
RTF1Q92541 AC008694.1-202ENST00000636953 945 ntBASIC27.46■■□□□ 1.99
RTF1Q92541 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RTF1Q92541 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
RTF1Q92541 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC27.45■■□□□ 1.99
RTF1Q92541 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
RTF1Q92541 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC27.45■■□□□ 1.99
RTF1Q92541 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC27.45■■□□□ 1.98
RTF1Q92541 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
RTF1Q92541 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC27.45■■□□□ 1.98
RTF1Q92541 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC27.45■■□□□ 1.98
RTF1Q92541 AC142086.2-201ENST00000569753 217 ntBASIC27.45■■□□□ 1.98
RTF1Q92541 AC069236.1-201ENST00000604339 616 ntBASIC27.45■■□□□ 1.98
RTF1Q92541 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
RTF1Q92541 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RTF1Q92541 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.44■■□□□ 1.98
RTF1Q92541 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.44■■□□□ 1.98
RTF1Q92541 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.44■■□□□ 1.98
RTF1Q92541 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC27.44■■□□□ 1.98
RTF1Q92541 AL591742.1-201ENST00000604433 565 ntBASIC27.44■■□□□ 1.98
RTF1Q92541 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.44■■□□□ 1.98
RTF1Q92541 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC27.44■■□□□ 1.98
RTF1Q92541 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
RTF1Q92541 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC27.44■■□□□ 1.98
RTF1Q92541 STX5-203ENST00000394690 1568 ntTSL 5 BASIC27.43■■□□□ 1.98
RTF1Q92541 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC27.43■■□□□ 1.98
RTF1Q92541 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC27.43■■□□□ 1.98
RTF1Q92541 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC27.43■■□□□ 1.98
RTF1Q92541 OR10C1-204ENST00000622521 1039 ntBASIC27.43■■□□□ 1.98
RTF1Q92541 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RTF1Q92541 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
RTF1Q92541 ME2-206ENST00000638410 2289 ntTSL 5 BASIC27.42■■□□□ 1.98
RTF1Q92541 ME2-210ENST00000639255 2262 ntTSL 5 BASIC27.42■■□□□ 1.98
RTF1Q92541 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
RTF1Q92541 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms