Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 AC105265.2-201ENST00000467189 838 ntBASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 AL049796.1-201ENST00000565336 1766 ntBASIC21.83■■□□□ 1.09
CCHCR1Q8TD31 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CCHCR1Q8TD31 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCHCR1Q8TD31 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCHCR1Q8TD31 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 AC003102.1-202ENST00000563394 1796 ntBASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CCHCR1Q8TD31 AC019069.1-201ENST00000610008 1333 ntBASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 LINC01521-201ENST00000504184 1943 ntBASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.81■■□□□ 1.08
CCHCR1Q8TD31 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCHCR1Q8TD31 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCHCR1Q8TD31 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCHCR1Q8TD31 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCHCR1Q8TD31 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCHCR1Q8TD31 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.77■■□□□ 1.08
CCHCR1Q8TD31 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCHCR1Q8TD31 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.77■■□□□ 1.08
CCHCR1Q8TD31 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms