Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 AC083906.2-201ENST00000511578 360 ntBASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
NKX2-3Q8TAU0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 TESC-206ENST00000541210 936 ntTSL 3 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.01■■□□□ 1.59
NKX2-3Q8TAU0 GOLGA2P6-201ENST00000340929 2049 ntBASIC25■■□□□ 1.59
NKX2-3Q8TAU0 NAA20-201ENST00000310450 920 ntTSL 2 BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25■■□□□ 1.59
NKX2-3Q8TAU0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.99■■□□□ 1.59
NKX2-3Q8TAU0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 MIR4651-201ENST00000582622 73 ntBASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
NKX2-3Q8TAU0 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 SLC7A5P2-201ENST00000553010 536 ntBASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 AP001160.3-201ENST00000601484 763 ntBASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 AC053503.5-201ENST00000601508 636 ntBASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 AC061975.6-201ENST00000579045 1553 ntBASIC24.97■■□□□ 1.59
NKX2-3Q8TAU0 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
NKX2-3Q8TAU0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms