Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
CLHC1Q8NHS4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLHC1Q8NHS4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 AC105233.4-201ENST00000642045 216 ntBASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CLHC1Q8NHS4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 AP001330.3-201ENST00000520123 633 ntBASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 AC027682.1-201ENST00000562846 899 ntBASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLHC1Q8NHS4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 AC106739.1-201ENST00000617035 715 ntBASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 AC073130.3-201ENST00000624389 2278 ntBASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.11■□□□□ 0.81
CLHC1Q8NHS4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 AC110285.6-201ENST00000617652 491 ntBASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.1■□□□□ 0.81
CLHC1Q8NHS4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms