Protein–RNA interactions for Protein: P60228

EIF3E, Eukaryotic translation initiation factor 3 subunit E, humanhuman

Known RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3EP60228 SUDS3P1-201ENST00000505831 966 ntBASIC21.68■■□□□ 1.06
EIF3EP60228 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
EIF3EP60228 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
EIF3EP60228 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.68■■□□□ 1.06
EIF3EP60228 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
EIF3EP60228 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
EIF3EP60228 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.68■■□□□ 1.06
EIF3EP60228 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.68■■□□□ 1.06
EIF3EP60228 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
EIF3EP60228 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.68■■□□□ 1.06
EIF3EP60228 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.67■■□□□ 1.06
EIF3EP60228 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 AL139246.5-201ENST00000606645 996 ntBASIC21.67■■□□□ 1.06
EIF3EP60228 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
EIF3EP60228 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.66■■□□□ 1.06
EIF3EP60228 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.66■■□□□ 1.06
EIF3EP60228 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.66■■□□□ 1.06
EIF3EP60228 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.66■■□□□ 1.06
EIF3EP60228 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
EIF3EP60228 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
EIF3EP60228 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
EIF3EP60228 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.66■■□□□ 1.06
EIF3EP60228 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.66■■□□□ 1.06
EIF3EP60228 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.65■■□□□ 1.06
EIF3EP60228 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.65■■□□□ 1.06
EIF3EP60228 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.65■■□□□ 1.06
EIF3EP60228 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
EIF3EP60228 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.65■■□□□ 1.06
EIF3EP60228 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
EIF3EP60228 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
EIF3EP60228 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.64■■□□□ 1.06
EIF3EP60228 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
EIF3EP60228 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.64■■□□□ 1.05
EIF3EP60228 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.64■■□□□ 1.05
EIF3EP60228 AC012414.1-201ENST00000556676 535 ntBASIC21.64■■□□□ 1.05
EIF3EP60228 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.64■■□□□ 1.05
EIF3EP60228 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
EIF3EP60228 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
EIF3EP60228 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
EIF3EP60228 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.64■■□□□ 1.05
EIF3EP60228 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.63■■□□□ 1.05
EIF3EP60228 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
EIF3EP60228 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
EIF3EP60228 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
EIF3EP60228 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
EIF3EP60228 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
EIF3EP60228 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.62■■□□□ 1.05
EIF3EP60228 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.62■■□□□ 1.05
EIF3EP60228 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.62■■□□□ 1.05
EIF3EP60228 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.62■■□□□ 1.05
EIF3EP60228 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
EIF3EP60228 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
EIF3EP60228 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.62■■□□□ 1.05
EIF3EP60228 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.62■■□□□ 1.05
EIF3EP60228 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms