Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.96■■□□□ 1.11
HDAC4P56524 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.96■■□□□ 1.11
HDAC4P56524 AC087623.3-201ENST00000607047 1098 ntBASIC21.96■■□□□ 1.11
HDAC4P56524 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
HDAC4P56524 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.96■■□□□ 1.11
HDAC4P56524 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HDAC4P56524 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HDAC4P56524 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HDAC4P56524 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HDAC4P56524 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HDAC4P56524 AL024507.2-201ENST00000606070 2574 ntBASIC21.95■■□□□ 1.11
HDAC4P56524 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.95■■□□□ 1.1
HDAC4P56524 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
HDAC4P56524 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
HDAC4P56524 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
HDAC4P56524 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 AC026271.2-201ENST00000428091 497 ntBASIC21.95■■□□□ 1.1
HDAC4P56524 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.95■■□□□ 1.1
HDAC4P56524 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.95■■□□□ 1.1
HDAC4P56524 KRT18P61-201ENST00000585825 1298 ntBASIC21.95■■□□□ 1.1
HDAC4P56524 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HDAC4P56524 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.95■■□□□ 1.1
HDAC4P56524 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.95■■□□□ 1.1
HDAC4P56524 AF106564.1-201ENST00000607058 2553 ntBASIC21.94■■□□□ 1.1
HDAC4P56524 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.94■■□□□ 1.1
HDAC4P56524 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.94■■□□□ 1.1
HDAC4P56524 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.94■■□□□ 1.1
HDAC4P56524 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.94■■□□□ 1.1
HDAC4P56524 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.94■■□□□ 1.1
HDAC4P56524 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HDAC4P56524 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
HDAC4P56524 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HDAC4P56524 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.94■■□□□ 1.1
HDAC4P56524 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HDAC4P56524 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HDAC4P56524 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.93■■□□□ 1.1
HDAC4P56524 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HDAC4P56524 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.93■■□□□ 1.1
HDAC4P56524 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HDAC4P56524 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.93■■□□□ 1.1
HDAC4P56524 AP004607.4-201ENST00000530158 1459 ntBASIC21.93■■□□□ 1.1
HDAC4P56524 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.93■■□□□ 1.1
HDAC4P56524 AC004854.2-201ENST00000608450 1441 ntBASIC21.93■■□□□ 1.1
HDAC4P56524 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.93■■□□□ 1.1
HDAC4P56524 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.93■■□□□ 1.1
HDAC4P56524 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 AC005229.4-201ENST00000610085 2198 ntBASIC21.92■■□□□ 1.1
HDAC4P56524 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
HDAC4P56524 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
HDAC4P56524 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.92■■□□□ 1.1
HDAC4P56524 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.92■■□□□ 1.1
HDAC4P56524 RARRES2P6-201ENST00000567333 442 ntBASIC21.92■■□□□ 1.1
HDAC4P56524 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.92■■□□□ 1.1
HDAC4P56524 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.92■■□□□ 1.1
HDAC4P56524 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HDAC4P56524 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HDAC4P56524 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
HDAC4P56524 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.91■■□□□ 1.1
HDAC4P56524 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.91■■□□□ 1.1
HDAC4P56524 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.91■■□□□ 1.1
HDAC4P56524 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.91■■□□□ 1.1
HDAC4P56524 AC138907.5-202ENST00000569484 235 ntBASIC21.91■■□□□ 1.1
HDAC4P56524 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.91■■□□□ 1.1
HDAC4P56524 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 AC104187.1-201ENST00000607510 612 ntBASIC21.91■■□□□ 1.1
HDAC4P56524 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HDAC4P56524 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HDAC4P56524 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
HDAC4P56524 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HDAC4P56524 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HDAC4P56524 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms