Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YDR381C-AYDR381C-A 345 nt4.82□□□□□ -1.64
MSH4P40965 SEC4YFL005W 648 nt4.82□□□□□ -1.64
MSH4P40965 TPK3YKL166C 1197 nt4.82□□□□□ -1.64
MSH4P40965 YLR290CYLR290C 834 nt4.82□□□□□ -1.64
MSH4P40965 RAD33YML011C 534 nt4.82□□□□□ -1.64
MSH4P40965 SFM1YOR021C 642 nt4.82□□□□□ -1.64
MSH4P40965 RPA43YOR340C 981 nt4.82□□□□□ -1.64
MSH4P40965 POF1YCL047C 777 nt4.82□□□□□ -1.64
MSH4P40965 YNR065CYNR065C 3351 nt4.82□□□□□ -1.64
MSH4P40965 DIP2YLR129W 2832 nt4.82□□□□□ -1.64
MSH4P40965 PEP5YMR231W 3090 nt4.81□□□□□ -1.64
MSH4P40965 RTT109YLL002W 1311 nt4.81□□□□□ -1.64
MSH4P40965 ECM22YLR228C 2445 nt4.81□□□□□ -1.64
MSH4P40965 YDR246W-AYDR246W-A 201 nt4.81□□□□□ -1.64
MSH4P40965 YGR190CYGR190C 366 nt4.81□□□□□ -1.64
MSH4P40965 YHR097CYHR097C 1101 nt4.81□□□□□ -1.64
MSH4P40965 YIL171WYIL171W 330 nt4.81□□□□□ -1.64
MSH4P40965 YIR036W-AYIR036W-A 402 nt4.81□□□□□ -1.64
MSH4P40965 YKT6YKL196C 603 nt4.81□□□□□ -1.64
MSH4P40965 VPS51YKR020W 495 nt4.81□□□□□ -1.64
MSH4P40965 YLR428CYLR428C 345 nt4.81□□□□□ -1.64
MSH4P40965 MTR10YOR160W 2919 nt4.81□□□□□ -1.64
MSH4P40965 YOL075CYOL075C 3885 nt4.81□□□□□ -1.64
MSH4P40965 EPO1YMR124W 2832 nt4.8□□□□□ -1.64
MSH4P40965 TRF5YNL299W 1929 nt4.8□□□□□ -1.64
MSH4P40965 YBR238CYBR238C 2196 nt4.8□□□□□ -1.64
MSH4P40965 NCB2YDR397C 441 nt4.8□□□□□ -1.64
MSH4P40965 CYM1YDR430C 2970 nt4.8□□□□□ -1.64
MSH4P40965 SPI1YER150W 447 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)CtQ(UUG)C 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)D1tQ(UUG)D1 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)D2tQ(UUG)D2 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)D3tQ(UUG)D3 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)E1tQ(UUG)E1 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)HtQ(UUG)H 72 nt4.8□□□□□ -1.64
MSH4P40965 tQ(UUG)LtQ(UUG)L 72 nt4.8□□□□□ -1.64
MSH4P40965 SWC7YLR385C 399 nt4.8□□□□□ -1.64
MSH4P40965 SIL1YOL031C 1266 nt4.8□□□□□ -1.64
MSH4P40965 RPS10AYOR293W 318 nt4.8□□□□□ -1.64
MSH4P40965 FKH2YNL068C 2589 nt4.8□□□□□ -1.64
MSH4P40965 POL1YNL102W 4407 nt4.79□□□□□ -1.64
MSH4P40965 TSR1YDL060W 2367 nt4.79□□□□□ -1.64
MSH4P40965 RNA14YMR061W 2034 nt4.79□□□□□ -1.64
MSH4P40965 PIM1YBL022C 3402 nt4.79□□□□□ -1.64
MSH4P40965 BRE4YDL231C 3378 nt4.79□□□□□ -1.64
MSH4P40965 YGR228WYGR228W 345 nt4.79□□□□□ -1.64
MSH4P40965 RSM25YIL093C 795 nt4.79□□□□□ -1.64
MSH4P40965 YPL135C-AYPL135C-A 174 nt4.79□□□□□ -1.64
MSH4P40965 YHR214C-CYHR214C-C 1437 nt4.79□□□□□ -1.64
MSH4P40965 CIT1YNR001C 1440 nt4.79□□□□□ -1.64
MSH4P40965 TAF7YMR227C 1773 nt4.78□□□□□ -1.64
MSH4P40965 RSC3YDR303C 2658 nt4.78□□□□□ -1.64
MSH4P40965 CDC14YFR028C 1656 nt4.78□□□□□ -1.64
MSH4P40965 YER175W-AYER175W-A 165 nt4.78□□□□□ -1.64
MSH4P40965 SUP56tL(CAA)A 82 nt4.78□□□□□ -1.64
MSH4P40965 SUP53tL(CAA)C 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)DtL(CAA)D 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)G1tL(CAA)G1 82 nt4.78□□□□□ -1.64
MSH4P40965 SUP54tL(CAA)G2 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)G3tL(CAA)G3 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)KtL(CAA)K 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)LtL(CAA)L 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)MtL(CAA)M 82 nt4.78□□□□□ -1.64
MSH4P40965 tL(CAA)NtL(CAA)N 82 nt4.78□□□□□ -1.64
MSH4P40965 BIG1YHR101C 1008 nt4.78□□□□□ -1.64
MSH4P40965 YKL136WYKL136W 399 nt4.78□□□□□ -1.64
MSH4P40965 SDO1YLR022C 753 nt4.78□□□□□ -1.64
MSH4P40965 NNT1YLR285W 786 nt4.78□□□□□ -1.64
MSH4P40965 RPS19AYOL121C 435 nt4.78□□□□□ -1.64
MSH4P40965 PEP12YOR036W 867 nt4.78□□□□□ -1.64
MSH4P40965 YOR053WYOR053W 342 nt4.78□□□□□ -1.64
MSH4P40965 PIN3YPR154W 648 nt4.78□□□□□ -1.64
MSH4P40965 YMR018WYMR018W 1545 nt4.77□□□□□ -1.65
MSH4P40965 YPR148CYPR148C 1308 nt4.77□□□□□ -1.65
MSH4P40965 UBP12YJL197W 3765 nt4.77□□□□□ -1.65
MSH4P40965 YDL240C-AYDL240C-A 138 nt4.77□□□□□ -1.65
MSH4P40965 SWF1YDR126W 1011 nt4.77□□□□□ -1.65
MSH4P40965 RSM24YDR175C 960 nt4.77□□□□□ -1.65
MSH4P40965 SPT2YER161C 1002 nt4.77□□□□□ -1.65
MSH4P40965 YJL119CYJL119C 324 nt4.77□□□□□ -1.65
MSH4P40965 RDN5-1RDN5-1 121 nt4.77□□□□□ -1.65
MSH4P40965 ATG10YLL042C 504 nt4.77□□□□□ -1.65
MSH4P40965 RDN5-6RDN5-6 121 nt4.77□□□□□ -1.65
MSH4P40965 GLO1YML004C 981 nt4.77□□□□□ -1.65
MSH4P40965 YOR225WYOR225W 330 nt4.77□□□□□ -1.65
MSH4P40965 YOR231C-AYOR231C-A 201 nt4.77□□□□□ -1.65
MSH4P40965 ACK1YDL203C 1872 nt4.76□□□□□ -1.65
MSH4P40965 VAB2YEL005C 849 nt4.76□□□□□ -1.65
MSH4P40965 DBP3YGL078C 1572 nt4.76□□□□□ -1.65
MSH4P40965 YIL024CYIL024C 570 nt4.76□□□□□ -1.65
MSH4P40965 MAK16YAL025C 921 nt4.76□□□□□ -1.65
MSH4P40965 RAD27YKL113C 1149 nt4.76□□□□□ -1.65
MSH4P40965 YBR141W-AYBR141W-A 96 nt4.76□□□□□ -1.65
MSH4P40965 YBR285WYBR285W 435 nt4.76□□□□□ -1.65
MSH4P40965 FAA1YOR317W 2103 nt4.76□□□□□ -1.65
MSH4P40965 SRO7YPR032W 3102 nt4.76□□□□□ -1.65
MSH4P40965 RDH54YBR073W 2877 nt4.75□□□□□ -1.65
MSH4P40965 ULP1YPL020C 1866 nt4.75□□□□□ -1.65
MSH4P40965 NOC2YOR206W 2133 nt4.75□□□□□ -1.65
MSH4P40965 GPI19YDR437W 423 nt4.75□□□□□ -1.65
Retrieved 100 of 7,029 protein–RNA pairs in 53.9 ms