Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.8■■□□□ 1.4
CIITAP33076 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.8■■□□□ 1.4
CIITAP33076 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
CIITAP33076 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CIITAP33076 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CIITAP33076 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.79■■□□□ 1.4
CIITAP33076 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.79■■□□□ 1.4
CIITAP33076 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.79■■□□□ 1.4
CIITAP33076 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CIITAP33076 AC010536.3-201ENST00000620306 533 ntBASIC23.79■■□□□ 1.4
CIITAP33076 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.79■■□□□ 1.4
CIITAP33076 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
CIITAP33076 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CIITAP33076 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.79■■□□□ 1.4
CIITAP33076 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CIITAP33076 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.78■■□□□ 1.4
CIITAP33076 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.78■■□□□ 1.4
CIITAP33076 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.78■■□□□ 1.4
CIITAP33076 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CIITAP33076 FBXW4P1-201ENST00000426721 2239 ntBASIC23.78■■□□□ 1.4
CIITAP33076 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.77■■□□□ 1.4
CIITAP33076 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.77■■□□□ 1.4
CIITAP33076 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.77■■□□□ 1.4
CIITAP33076 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CIITAP33076 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.77■■□□□ 1.4
CIITAP33076 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.77■■□□□ 1.4
CIITAP33076 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.76■■□□□ 1.39
CIITAP33076 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 AC243732.1-201ENST00000612648 864 ntBASIC23.76■■□□□ 1.39
CIITAP33076 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.76■■□□□ 1.39
CIITAP33076 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CIITAP33076 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.76■■□□□ 1.39
CIITAP33076 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
CIITAP33076 RBM17P2-201ENST00000616397 1405 ntBASIC23.76■■□□□ 1.39
CIITAP33076 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.75■■□□□ 1.39
CIITAP33076 CNN2P6-201ENST00000439038 900 ntBASIC23.75■■□□□ 1.39
CIITAP33076 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
CIITAP33076 TERF1P5-201ENST00000477545 1207 ntBASIC23.75■■□□□ 1.39
CIITAP33076 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC23.75■■□□□ 1.39
CIITAP33076 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
CIITAP33076 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CIITAP33076 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.74■■□□□ 1.39
CIITAP33076 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.74■■□□□ 1.39
CIITAP33076 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23.74■■□□□ 1.39
CIITAP33076 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.74■■□□□ 1.39
CIITAP33076 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.74■■□□□ 1.39
CIITAP33076 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.74■■□□□ 1.39
CIITAP33076 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.74■■□□□ 1.39
CIITAP33076 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.74■■□□□ 1.39
CIITAP33076 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CIITAP33076 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CIITAP33076 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms