Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.25■□□□□ 0.67
MSX1P28360 AC138907.5-202ENST00000569484 235 ntBASIC19.25■□□□□ 0.67
MSX1P28360 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.25■□□□□ 0.67
MSX1P28360 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MSX1P28360 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
MSX1P28360 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.24■□□□□ 0.67
MSX1P28360 FBXW4P1-201ENST00000426721 2239 ntBASIC19.24■□□□□ 0.67
MSX1P28360 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.24■□□□□ 0.67
MSX1P28360 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.24■□□□□ 0.67
MSX1P28360 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.24■□□□□ 0.67
MSX1P28360 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.24■□□□□ 0.67
MSX1P28360 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 AC104771.1-201ENST00000603335 964 ntBASIC19.24■□□□□ 0.67
MSX1P28360 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.24■□□□□ 0.67
MSX1P28360 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.24■□□□□ 0.67
MSX1P28360 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
MSX1P28360 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
MSX1P28360 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
MSX1P28360 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.23■□□□□ 0.67
MSX1P28360 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
MSX1P28360 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSX1P28360 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.23■□□□□ 0.67
MSX1P28360 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.23■□□□□ 0.67
MSX1P28360 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.23■□□□□ 0.67
MSX1P28360 AC008175.2-201ENST00000612840 297 ntBASIC19.23■□□□□ 0.67
MSX1P28360 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.23■□□□□ 0.67
MSX1P28360 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.23■□□□□ 0.67
MSX1P28360 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
MSX1P28360 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
MSX1P28360 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
MSX1P28360 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MSX1P28360 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 POU5F1P4-201ENST00000413175 1085 ntBASIC19.22■□□□□ 0.67
MSX1P28360 AC006970.2-201ENST00000450065 779 ntBASIC19.22■□□□□ 0.67
MSX1P28360 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.22■□□□□ 0.67
MSX1P28360 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.22■□□□□ 0.67
MSX1P28360 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.22■□□□□ 0.67
MSX1P28360 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.22■□□□□ 0.67
MSX1P28360 AC104187.1-201ENST00000607510 612 ntBASIC19.22■□□□□ 0.67
MSX1P28360 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.22■□□□□ 0.67
MSX1P28360 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MSX1P28360 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
MSX1P28360 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 LINC00565-201ENST00000562710 2331 ntBASIC19.22■□□□□ 0.67
MSX1P28360 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MSX1P28360 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.21■□□□□ 0.67
MSX1P28360 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.21■□□□□ 0.67
MSX1P28360 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.21■□□□□ 0.67
MSX1P28360 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.21■□□□□ 0.67
MSX1P28360 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX1P28360 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
MSX1P28360 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.21■□□□□ 0.67
MSX1P28360 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MSX1P28360 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms