Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
LDLRP01130 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.2■□□□□ 0.82
LDLRP01130 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
LDLRP01130 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDLRP01130 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.19■□□□□ 0.82
LDLRP01130 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
LDLRP01130 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.19■□□□□ 0.82
LDLRP01130 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LDLRP01130 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDLRP01130 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LDLRP01130 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
LDLRP01130 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LDLRP01130 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.18■□□□□ 0.82
LDLRP01130 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LDLRP01130 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.18■□□□□ 0.82
LDLRP01130 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.18■□□□□ 0.82
LDLRP01130 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDLRP01130 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LDLRP01130 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
LDLRP01130 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.17■□□□□ 0.82
LDLRP01130 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 CCDC92B-201ENST00000575506 885 ntBASIC20.17■□□□□ 0.82
LDLRP01130 NTF6G-201ENST00000591094 616 ntBASIC20.17■□□□□ 0.82
LDLRP01130 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDLRP01130 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.17■□□□□ 0.82
LDLRP01130 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.17■□□□□ 0.82
LDLRP01130 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
LDLRP01130 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.16■□□□□ 0.82
LDLRP01130 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.16■□□□□ 0.82
LDLRP01130 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.16■□□□□ 0.82
LDLRP01130 DUX4L4-201ENST00000566884 1269 ntBASIC20.16■□□□□ 0.82
LDLRP01130 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LDLRP01130 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.16■□□□□ 0.82
LDLRP01130 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
LDLRP01130 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDLRP01130 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LDLRP01130 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LDLRP01130 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.15■□□□□ 0.82
LDLRP01130 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDLRP01130 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.15■□□□□ 0.82
LDLRP01130 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.15■□□□□ 0.82
LDLRP01130 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.15■□□□□ 0.82
LDLRP01130 MIR6084-201ENST00000622012 110 ntBASIC20.15■□□□□ 0.82
LDLRP01130 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.15■□□□□ 0.82
LDLRP01130 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDLRP01130 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LDLRP01130 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
LDLRP01130 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LDLRP01130 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.82
LDLRP01130 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
LDLRP01130 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
LDLRP01130 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.14■□□□□ 0.81
LDLRP01130 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
LDLRP01130 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
LDLRP01130 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LDLRP01130 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms