Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS4BO75351 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS4BO75351 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS4BO75351 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS4BO75351 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS4BO75351 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS4BO75351 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.55■□□□□ 0.88
VPS4BO75351 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS4BO75351 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS4BO75351 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS4BO75351 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS4BO75351 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS4BO75351 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VPS4BO75351 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
VPS4BO75351 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS4BO75351 AL358852.1-201ENST00000623174 1268 ntBASIC20.54■□□□□ 0.88
VPS4BO75351 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS4BO75351 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS4BO75351 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
VPS4BO75351 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VPS4BO75351 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.53■□□□□ 0.88
VPS4BO75351 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
VPS4BO75351 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VPS4BO75351 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS4BO75351 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
VPS4BO75351 TSPY26P-201ENST00000476365 1326 ntBASIC20.53■□□□□ 0.88
VPS4BO75351 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS4BO75351 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS4BO75351 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS4BO75351 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
VPS4BO75351 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS4BO75351 AC123595.1-201ENST00000440769 1046 ntBASIC20.52■□□□□ 0.88
VPS4BO75351 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.52■□□□□ 0.88
VPS4BO75351 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VPS4BO75351 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS4BO75351 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS4BO75351 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS4BO75351 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VPS4BO75351 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
VPS4BO75351 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS4BO75351 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.51■□□□□ 0.87
VPS4BO75351 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS4BO75351 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.51■□□□□ 0.87
VPS4BO75351 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.51■□□□□ 0.87
VPS4BO75351 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VPS4BO75351 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.51■□□□□ 0.87
VPS4BO75351 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VPS4BO75351 LINC01521-201ENST00000504184 1943 ntBASIC20.51■□□□□ 0.87
VPS4BO75351 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VPS4BO75351 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VPS4BO75351 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS4BO75351 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms