Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
NPHP4O75161 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC30.07■■■□□ 2.4
NPHP4O75161 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP4O75161 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC30.06■■■□□ 2.4
NPHP4O75161 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP4O75161 KRT18P35-201ENST00000510488 1269 ntBASIC30.06■■■□□ 2.4
NPHP4O75161 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC30.06■■■□□ 2.4
NPHP4O75161 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC30.06■■■□□ 2.4
NPHP4O75161 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP4O75161 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC30.06■■■□□ 2.4
NPHP4O75161 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP4O75161 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP4O75161 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC30.05■■■□□ 2.4
NPHP4O75161 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
NPHP4O75161 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC30.05■■■□□ 2.4
NPHP4O75161 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC30.05■■■□□ 2.4
NPHP4O75161 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP4O75161 AC091799.1-201ENST00000422823 811 ntBASIC30.05■■■□□ 2.4
NPHP4O75161 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC30.05■■■□□ 2.4
NPHP4O75161 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP4O75161 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC30.05■■■□□ 2.4
NPHP4O75161 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC30.04■■■□□ 2.4
NPHP4O75161 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC30.04■■■□□ 2.4
NPHP4O75161 MIR4785-201ENST00000585005 73 ntBASIC30.04■■■□□ 2.4
NPHP4O75161 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
NPHP4O75161 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC30.03■■■□□ 2.4
NPHP4O75161 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC30.03■■■□□ 2.4
NPHP4O75161 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP4O75161 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC30.02■■■□□ 2.4
NPHP4O75161 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 MFF-205ENST00000354503 1085 ntTSL 2 BASIC30.02■■■□□ 2.4
NPHP4O75161 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 SERF2-207ENST00000409614 582 ntTSL 2 BASIC30.02■■■□□ 2.4
NPHP4O75161 REXO2-208ENST00000539754 791 ntTSL 2 BASIC30.02■■■□□ 2.4
NPHP4O75161 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP4O75161 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC30.01■■■□□ 2.4
NPHP4O75161 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC30.01■■■□□ 2.39
NPHP4O75161 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC30.01■■■□□ 2.39
NPHP4O75161 AL355075.4-201ENST00000554988 638 ntBASIC30.01■■■□□ 2.39
NPHP4O75161 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
NPHP4O75161 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP4O75161 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP4O75161 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC30■■■□□ 2.39
NPHP4O75161 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC30■■■□□ 2.39
NPHP4O75161 TMPOP1-202ENST00000424642 1267 ntBASIC30■■■□□ 2.39
NPHP4O75161 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC30■■■□□ 2.39
NPHP4O75161 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC30■■■□□ 2.39
NPHP4O75161 RN7SL850P-201ENST00000579959 291 ntBASIC30■■■□□ 2.39
NPHP4O75161 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 SNX21-213ENST00000614929 587 ntTSL 5 BASIC30■■■□□ 2.39
NPHP4O75161 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
NPHP4O75161 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP4O75161 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 MCRIP2P1-201ENST00000394346 511 ntBASIC29.99■■■□□ 2.39
NPHP4O75161 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC29.99■■■□□ 2.39
NPHP4O75161 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 CD177P1-201ENST00000606252 935 ntBASIC29.99■■■□□ 2.39
NPHP4O75161 AC124016.1-201ENST00000609552 612 ntBASIC29.99■■■□□ 2.39
NPHP4O75161 AC113410.3-201ENST00000623366 203 ntBASIC29.99■■■□□ 2.39
NPHP4O75161 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
NPHP4O75161 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
NPHP4O75161 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP4O75161 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP4O75161 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP4O75161 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP4O75161 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP4O75161 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
NPHP4O75161 RARG-204ENST00000543726 1779 ntTSL 2 BASIC29.98■■■□□ 2.39
NPHP4O75161 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC29.97■■■□□ 2.39
NPHP4O75161 AC133681.1-201ENST00000465482 601 ntBASIC29.97■■■□□ 2.39
NPHP4O75161 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms