Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC27.13■■□□□ 1.93
PTCD1O75127 C9orf163-202ENST00000624034 2573 ntBASIC27.13■■□□□ 1.93
PTCD1O75127 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PTCD1O75127 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
PTCD1O75127 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC27.13■■□□□ 1.93
PTCD1O75127 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.12■■□□□ 1.93
PTCD1O75127 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC27.12■■□□□ 1.93
PTCD1O75127 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC27.12■■□□□ 1.93
PTCD1O75127 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 AL158047.1-201ENST00000445918 881 ntBASIC27.12■■□□□ 1.93
PTCD1O75127 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 IRX5-204ENST00000560154 879 ntTSL 5 BASIC27.12■■□□□ 1.93
PTCD1O75127 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC27.12■■□□□ 1.93
PTCD1O75127 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PTCD1O75127 AC026471.6-201ENST00000622954 1905 ntBASIC27.12■■□□□ 1.93
PTCD1O75127 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC27.11■■□□□ 1.93
PTCD1O75127 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 SERPINH1P1-201ENST00000419794 1249 ntBASIC27.11■■□□□ 1.93
PTCD1O75127 AC128676.1-201ENST00000454392 318 ntBASIC27.11■■□□□ 1.93
PTCD1O75127 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.11■■□□□ 1.93
PTCD1O75127 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
PTCD1O75127 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PTCD1O75127 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PTCD1O75127 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PTCD1O75127 LSM12P1-201ENST00000411836 588 ntBASIC27.1■■□□□ 1.93
PTCD1O75127 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PTCD1O75127 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC27.1■■□□□ 1.93
PTCD1O75127 CD44-222ENST00000526025 1052 ntTSL 2 BASIC27.1■■□□□ 1.93
PTCD1O75127 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC27.1■■□□□ 1.93
PTCD1O75127 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC27.1■■□□□ 1.93
PTCD1O75127 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC27.1■■□□□ 1.93
PTCD1O75127 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC27.1■■□□□ 1.93
PTCD1O75127 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC27.1■■□□□ 1.93
PTCD1O75127 KRT17P1-201ENST00000399211 1546 ntBASIC27.1■■□□□ 1.93
PTCD1O75127 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PTCD1O75127 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
PTCD1O75127 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
PTCD1O75127 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC27.09■■□□□ 1.93
PTCD1O75127 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
PTCD1O75127 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
PTCD1O75127 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC27.09■■□□□ 1.93
PTCD1O75127 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC27.09■■□□□ 1.93
PTCD1O75127 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC27.09■■□□□ 1.93
PTCD1O75127 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC27.09■■□□□ 1.93
PTCD1O75127 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC27.09■■□□□ 1.93
PTCD1O75127 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC27.09■■□□□ 1.93
PTCD1O75127 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC27.09■■□□□ 1.93
PTCD1O75127 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PTCD1O75127 AC092053.2-201ENST00000640557 1818 ntBASIC27.09■■□□□ 1.93
PTCD1O75127 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC27.09■■□□□ 1.93
PTCD1O75127 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC27.08■■□□□ 1.93
PTCD1O75127 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC27.08■■□□□ 1.93
PTCD1O75127 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC27.08■■□□□ 1.93
PTCD1O75127 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC27.08■■□□□ 1.93
PTCD1O75127 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC27.08■■□□□ 1.93
PTCD1O75127 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
PTCD1O75127 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC27.07■■□□□ 1.92
PTCD1O75127 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
PTCD1O75127 AC091799.1-201ENST00000422823 811 ntBASIC27.07■■□□□ 1.92
PTCD1O75127 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC27.07■■□□□ 1.92
PTCD1O75127 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC27.07■■□□□ 1.92
PTCD1O75127 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PTCD1O75127 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC27.07■■□□□ 1.92
PTCD1O75127 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC27.07■■□□□ 1.92
PTCD1O75127 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC27.06■■□□□ 1.92
PTCD1O75127 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
PTCD1O75127 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
PTCD1O75127 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC27.06■■□□□ 1.92
PTCD1O75127 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms