Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SGCEO43556 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.52■□□□□ 0.56
SGCEO43556 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.52■□□□□ 0.56
SGCEO43556 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.52■□□□□ 0.55
SGCEO43556 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.55
SGCEO43556 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SGCEO43556 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SGCEO43556 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.52■□□□□ 0.55
SGCEO43556 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 AC092667.1-201ENST00000434301 2586 ntBASIC18.51■□□□□ 0.55
SGCEO43556 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
SGCEO43556 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SGCEO43556 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.51■□□□□ 0.55
SGCEO43556 TPRG1LP1-201ENST00000598702 760 ntBASIC18.51■□□□□ 0.55
SGCEO43556 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SGCEO43556 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SGCEO43556 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.5■□□□□ 0.55
SGCEO43556 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.5■□□□□ 0.55
SGCEO43556 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.5■□□□□ 0.55
SGCEO43556 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SGCEO43556 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SGCEO43556 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.49■□□□□ 0.55
SGCEO43556 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.49■□□□□ 0.55
SGCEO43556 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 AC027612.3-201ENST00000413684 1047 ntBASIC18.49■□□□□ 0.55
SGCEO43556 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.49■□□□□ 0.55
SGCEO43556 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
SGCEO43556 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.49■□□□□ 0.55
SGCEO43556 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SGCEO43556 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SGCEO43556 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SGCEO43556 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SGCEO43556 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.48■□□□□ 0.55
SGCEO43556 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SGCEO43556 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.48■□□□□ 0.55
SGCEO43556 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SGCEO43556 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SGCEO43556 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SGCEO43556 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.47■□□□□ 0.55
SGCEO43556 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SGCEO43556 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.47■□□□□ 0.55
SGCEO43556 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SGCEO43556 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SGCEO43556 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.47■□□□□ 0.55
SGCEO43556 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
SGCEO43556 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.47■□□□□ 0.55
SGCEO43556 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms