Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PROM1O43490 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.95■□□□□ 0.78
PROM1O43490 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.94■□□□□ 0.78
PROM1O43490 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.94■□□□□ 0.78
PROM1O43490 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.94■□□□□ 0.78
PROM1O43490 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.94■□□□□ 0.78
PROM1O43490 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.94■□□□□ 0.78
PROM1O43490 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.94■□□□□ 0.78
PROM1O43490 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
PROM1O43490 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.93■□□□□ 0.78
PROM1O43490 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PROM1O43490 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.93■□□□□ 0.78
PROM1O43490 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.93■□□□□ 0.78
PROM1O43490 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 MIR6821-201ENST00000617625 74 ntBASIC19.93■□□□□ 0.78
PROM1O43490 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.93■□□□□ 0.78
PROM1O43490 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.93■□□□□ 0.78
PROM1O43490 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.93■□□□□ 0.78
PROM1O43490 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PROM1O43490 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PROM1O43490 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.92■□□□□ 0.78
PROM1O43490 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.92■□□□□ 0.78
PROM1O43490 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
PROM1O43490 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.92■□□□□ 0.78
PROM1O43490 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.92■□□□□ 0.78
PROM1O43490 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.92■□□□□ 0.78
PROM1O43490 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.92■□□□□ 0.78
PROM1O43490 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.92■□□□□ 0.78
PROM1O43490 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PROM1O43490 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PROM1O43490 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PROM1O43490 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.91■□□□□ 0.78
PROM1O43490 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.91■□□□□ 0.78
PROM1O43490 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PROM1O43490 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.91■□□□□ 0.78
PROM1O43490 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PROM1O43490 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PROM1O43490 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.9■□□□□ 0.78
PROM1O43490 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L2-201ENST00000561772 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.9■□□□□ 0.78
PROM1O43490 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L6-201ENST00000626483 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L1-201ENST00000627662 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L8-201ENST00000629013 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L3-201ENST00000630187 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L7-201ENST00000630678 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 DUX4L5-201ENST00000630834 1275 ntBASIC19.9■□□□□ 0.78
PROM1O43490 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.9■□□□□ 0.78
PROM1O43490 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PROM1O43490 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.9■□□□□ 0.78
PROM1O43490 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PROM1O43490 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PROM1O43490 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PROM1O43490 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.89■□□□□ 0.77
PROM1O43490 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PROM1O43490 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PROM1O43490 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.89■□□□□ 0.77
PROM1O43490 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.89■□□□□ 0.77
PROM1O43490 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms