Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
MSH4O15457 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH4O15457 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH4O15457 DUX4L16-201ENST00000555130 1264 ntBASIC23.73■■□□□ 1.39
MSH4O15457 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.73■■□□□ 1.39
MSH4O15457 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
MSH4O15457 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 KRT16P2-201ENST00000414673 1423 ntBASIC23.73■■□□□ 1.39
MSH4O15457 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.73■■□□□ 1.39
MSH4O15457 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH4O15457 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH4O15457 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH4O15457 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH4O15457 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
MSH4O15457 LINC00565-201ENST00000562710 2331 ntBASIC23.72■■□□□ 1.39
MSH4O15457 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH4O15457 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.72■■□□□ 1.39
MSH4O15457 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.72■■□□□ 1.39
MSH4O15457 AC120498.10-201ENST00000621827 505 ntBASIC23.72■■□□□ 1.39
MSH4O15457 AC244015.2-201ENST00000616358 1861 ntBASIC23.72■■□□□ 1.39
MSH4O15457 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.72■■□□□ 1.39
MSH4O15457 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH4O15457 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.71■■□□□ 1.39
MSH4O15457 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.71■■□□□ 1.39
MSH4O15457 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC23.71■■□□□ 1.39
MSH4O15457 AC090192.1-201ENST00000517740 490 ntBASIC23.71■■□□□ 1.39
MSH4O15457 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.71■■□□□ 1.39
MSH4O15457 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH4O15457 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
MSH4O15457 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
MSH4O15457 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
MSH4O15457 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.7■■□□□ 1.39
MSH4O15457 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.7■■□□□ 1.39
MSH4O15457 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH4O15457 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.7■■□□□ 1.38
MSH4O15457 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH4O15457 AC010536.3-201ENST00000620306 533 ntBASIC23.7■■□□□ 1.38
MSH4O15457 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH4O15457 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
MSH4O15457 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH4O15457 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
MSH4O15457 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
MSH4O15457 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.69■■□□□ 1.38
MSH4O15457 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.69■■□□□ 1.38
MSH4O15457 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH4O15457 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH4O15457 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH4O15457 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
MSH4O15457 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
MSH4O15457 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH4O15457 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
MSH4O15457 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.68■■□□□ 1.38
MSH4O15457 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
MSH4O15457 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
MSH4O15457 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
MSH4O15457 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
MSH4O15457 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.68■■□□□ 1.38
MSH4O15457 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH4O15457 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
MSH4O15457 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.67■■□□□ 1.38
MSH4O15457 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
MSH4O15457 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.67■■□□□ 1.38
MSH4O15457 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
MSH4O15457 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.67■■□□□ 1.38
MSH4O15457 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms