Protein–RNA interactions for Protein: Q9UQN3

CHMP2B, Charged multivesicular body protein 2b, humanhuman

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2BQ9UQN3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP2BQ9UQN3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP2BQ9UQN3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CHMP2BQ9UQN3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 AL136116.3-201ENST00000402907 1138 ntBASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 SMUG1P1-201ENST00000590640 811 ntBASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CHMP2BQ9UQN3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CHMP2BQ9UQN3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CHMP2BQ9UQN3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CHMP2BQ9UQN3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 MIR4767-201ENST00000582827 78 ntBASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.39■■□□□ 1.01
CHMP2BQ9UQN3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 LINC01521-201ENST00000504184 1943 ntBASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.38■■□□□ 1.01
CHMP2BQ9UQN3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 LINC01006-201ENST00000333319 2292 ntBASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CHMP2BQ9UQN3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 BX842568.3-201ENST00000418104 571 ntBASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CHMP2BQ9UQN3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.35■■□□□ 1.01
CHMP2BQ9UQN3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms