Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.85■□□□□ 0.93
MKS1Q9NXB0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 AC136469.2-201ENST00000623944 1028 ntBASIC20.85■□□□□ 0.93
MKS1Q9NXB0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MKS1Q9NXB0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 SLC47A1P1-202ENST00000449666 945 ntBASIC20.83■□□□□ 0.93
MKS1Q9NXB0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.83■□□□□ 0.93
MKS1Q9NXB0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MKS1Q9NXB0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
MKS1Q9NXB0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.83■□□□□ 0.92
MKS1Q9NXB0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.83■□□□□ 0.92
MKS1Q9NXB0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 SERBP1P1-201ENST00000396021 1160 ntBASIC20.82■□□□□ 0.92
MKS1Q9NXB0 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MKS1Q9NXB0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 AC011298.3-201ENST00000615796 283 ntBASIC20.81■□□□□ 0.92
MKS1Q9NXB0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.81■□□□□ 0.92
MKS1Q9NXB0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 AC027702.1-201ENST00000563810 1770 ntBASIC20.8■□□□□ 0.92
MKS1Q9NXB0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 AC121338.2-201ENST00000622535 1744 ntBASIC20.8■□□□□ 0.92
MKS1Q9NXB0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
MKS1Q9NXB0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
MKS1Q9NXB0 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 DUX4L19-201ENST00000557448 1267 ntBASIC20.78■□□□□ 0.92
MKS1Q9NXB0 SMUG1P1-201ENST00000590640 811 ntBASIC20.78■□□□□ 0.92
MKS1Q9NXB0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
MKS1Q9NXB0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms