Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP42Q9H9J4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP42Q9H9J4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP42Q9H9J4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP42Q9H9J4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP42Q9H9J4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
USP42Q9H9J4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
USP42Q9H9J4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
USP42Q9H9J4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.95■■□□□ 1.91
USP42Q9H9J4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC26.95■■□□□ 1.91
USP42Q9H9J4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC26.95■■□□□ 1.91
USP42Q9H9J4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
USP42Q9H9J4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
USP42Q9H9J4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USP42Q9H9J4 AC010980.2-201ENST00000587099 1412 ntBASIC26.95■■□□□ 1.9
USP42Q9H9J4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.95■■□□□ 1.9
USP42Q9H9J4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.94■■□□□ 1.9
USP42Q9H9J4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC26.94■■□□□ 1.9
USP42Q9H9J4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26.94■■□□□ 1.9
USP42Q9H9J4 AL162412.1-201ENST00000567129 965 ntBASIC26.94■■□□□ 1.9
USP42Q9H9J4 AC006058.3-201ENST00000606217 1069 ntBASIC26.94■■□□□ 1.9
USP42Q9H9J4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.94■■□□□ 1.9
USP42Q9H9J4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.94■■□□□ 1.9
USP42Q9H9J4 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP42Q9H9J4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP42Q9H9J4 AC128676.1-201ENST00000454392 318 ntBASIC26.93■■□□□ 1.9
USP42Q9H9J4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.93■■□□□ 1.9
USP42Q9H9J4 AC120498.10-201ENST00000621827 505 ntBASIC26.93■■□□□ 1.9
USP42Q9H9J4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC26.93■■□□□ 1.9
USP42Q9H9J4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
USP42Q9H9J4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.93■■□□□ 1.9
USP42Q9H9J4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP42Q9H9J4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP42Q9H9J4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP42Q9H9J4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC26.92■■□□□ 1.9
USP42Q9H9J4 AC008175.2-201ENST00000612840 297 ntBASIC26.92■■□□□ 1.9
USP42Q9H9J4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP42Q9H9J4 RBM17P2-201ENST00000616397 1405 ntBASIC26.92■■□□□ 1.9
USP42Q9H9J4 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
USP42Q9H9J4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP42Q9H9J4 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
USP42Q9H9J4 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP42Q9H9J4 AC127496.7-201ENST00000625110 1798 ntBASIC26.92■■□□□ 1.9
USP42Q9H9J4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
USP42Q9H9J4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 AL596275.1-201ENST00000423464 877 ntBASIC26.91■■□□□ 1.9
USP42Q9H9J4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 AL158047.1-201ENST00000445918 881 ntBASIC26.91■■□□□ 1.9
USP42Q9H9J4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
USP42Q9H9J4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
USP42Q9H9J4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
USP42Q9H9J4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 POU5F1P4-201ENST00000413175 1085 ntBASIC26.9■■□□□ 1.9
USP42Q9H9J4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 AC142381.4-202ENST00000563973 229 ntBASIC26.9■■□□□ 1.9
USP42Q9H9J4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC26.9■■□□□ 1.9
USP42Q9H9J4 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USP42Q9H9J4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC26.89■■□□□ 1.9
USP42Q9H9J4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
USP42Q9H9J4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC26.89■■□□□ 1.9
USP42Q9H9J4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
USP42Q9H9J4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
USP42Q9H9J4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
USP42Q9H9J4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
USP42Q9H9J4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC26.89■■□□□ 1.89
USP42Q9H9J4 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms