Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCX3BQ9H321 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VCX3BQ9H321 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VCX3BQ9H321 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
VCX3BQ9H321 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.07■□□□□ 0.8
VCX3BQ9H321 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VCX3BQ9H321 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.07■□□□□ 0.8
VCX3BQ9H321 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 BX323043.1-201ENST00000641006 1765 ntBASIC20.06■□□□□ 0.8
VCX3BQ9H321 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 AC090340.1-201ENST00000620778 4980 ntBASIC20.06■□□□□ 0.8
VCX3BQ9H321 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 AC026471.1-201ENST00000564629 3026 ntBASIC20.06■□□□□ 0.8
VCX3BQ9H321 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VCX3BQ9H321 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.06■□□□□ 0.8
VCX3BQ9H321 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 AC073314.1-201ENST00000568729 2216 ntBASIC20.05■□□□□ 0.8
VCX3BQ9H321 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 AC018755.3-202ENST00000596210 929 ntBASIC20.05■□□□□ 0.8
VCX3BQ9H321 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VCX3BQ9H321 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VCX3BQ9H321 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 AC004448.1-201ENST00000458332 883 ntBASIC20.04■□□□□ 0.8
VCX3BQ9H321 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 SMG8-203ENST00000578922 2178 ntBASIC20.04■□□□□ 0.8
VCX3BQ9H321 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.04■□□□□ 0.8
VCX3BQ9H321 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VCX3BQ9H321 AC018445.3-201ENST00000624177 1945 ntBASIC20.04■□□□□ 0.8
VCX3BQ9H321 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
VCX3BQ9H321 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VCX3BQ9H321 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VCX3BQ9H321 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCX3BQ9H321 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VCX3BQ9H321 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms