Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 RBM17P2-201ENST00000616397 1405 ntBASIC21.8■■□□□ 1.08
COL25A1Q9BXS0 AC010501.1-201ENST00000606270 1962 ntBASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 KRASP1-201ENST00000407852 552 ntBASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 AC120498.10-201ENST00000621827 505 ntBASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.79■■□□□ 1.08
COL25A1Q9BXS0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 AP000347.1-202ENST00000435868 847 ntBASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.78■■□□□ 1.08
COL25A1Q9BXS0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 SLC25A3P1-201ENST00000443844 931 ntBASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL25A1Q9BXS0 KRT18P22-201ENST00000402024 1347 ntBASIC21.77■■□□□ 1.07
COL25A1Q9BXS0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 AC092803.2-201ENST00000564287 1899 ntBASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 AC053503.5-201ENST00000601508 636 ntBASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL25A1Q9BXS0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.75■■□□□ 1.07
COL25A1Q9BXS0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 PVRIG2P-201ENST00000435460 978 ntBASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 AC006011.2-201ENST00000621313 1158 ntBASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.74■■□□□ 1.07
COL25A1Q9BXS0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 AL589743.5-201ENST00000616611 1050 ntBASIC21.73■■□□□ 1.07
COL25A1Q9BXS0 AC004263.2-201ENST00000617183 678 ntBASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms