Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.22■□□□□ 0.67
NPAS1Q99742 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.22■□□□□ 0.67
NPAS1Q99742 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.22■□□□□ 0.67
NPAS1Q99742 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.22■□□□□ 0.67
NPAS1Q99742 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.22■□□□□ 0.67
NPAS1Q99742 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.22■□□□□ 0.67
NPAS1Q99742 MIR5787-201ENST00000611784 55 ntBASIC19.22■□□□□ 0.67
NPAS1Q99742 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
NPAS1Q99742 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
NPAS1Q99742 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
NPAS1Q99742 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS1Q99742 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.21■□□□□ 0.67
NPAS1Q99742 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 KRT87P-202ENST00000534226 1464 ntBASIC19.21■□□□□ 0.67
NPAS1Q99742 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.21■□□□□ 0.67
NPAS1Q99742 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
NPAS1Q99742 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.2■□□□□ 0.66
NPAS1Q99742 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.2■□□□□ 0.66
NPAS1Q99742 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.2■□□□□ 0.66
NPAS1Q99742 AC104187.1-201ENST00000607510 612 ntBASIC19.2■□□□□ 0.66
NPAS1Q99742 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
NPAS1Q99742 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS1Q99742 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
NPAS1Q99742 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS1Q99742 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 EEF1DP3-203ENST00000566025 782 ntBASIC19.19■□□□□ 0.66
NPAS1Q99742 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS1Q99742 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.19■□□□□ 0.66
NPAS1Q99742 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.19■□□□□ 0.66
NPAS1Q99742 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPAS1Q99742 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
NPAS1Q99742 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.18■□□□□ 0.66
NPAS1Q99742 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.18■□□□□ 0.66
NPAS1Q99742 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.18■□□□□ 0.66
NPAS1Q99742 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.18■□□□□ 0.66
NPAS1Q99742 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.18■□□□□ 0.66
NPAS1Q99742 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.18■□□□□ 0.66
NPAS1Q99742 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.18■□□□□ 0.66
NPAS1Q99742 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
NPAS1Q99742 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS1Q99742 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.17■□□□□ 0.66
NPAS1Q99742 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
NPAS1Q99742 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.17■□□□□ 0.66
NPAS1Q99742 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.17■□□□□ 0.66
NPAS1Q99742 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.17■□□□□ 0.66
NPAS1Q99742 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.17■□□□□ 0.66
NPAS1Q99742 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.17■□□□□ 0.66
NPAS1Q99742 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.17■□□□□ 0.66
NPAS1Q99742 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS1Q99742 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NPAS1Q99742 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
NPAS1Q99742 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS1Q99742 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NPAS1Q99742 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.16■□□□□ 0.66
NPAS1Q99742 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS1Q99742 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.16■□□□□ 0.66
NPAS1Q99742 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms