Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 MYC-209ENST00000641252 345 ntBASIC21.2■□□□□ 0.98
HMGB4Q8WW32 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HMGB4Q8WW32 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 AL162412.1-201ENST00000567129 965 ntBASIC21.19■□□□□ 0.98
HMGB4Q8WW32 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGB4Q8WW32 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 DUSP5P2-201ENST00000426873 1033 ntBASIC21.18■□□□□ 0.98
HMGB4Q8WW32 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 AC091874.3-201ENST00000512672 1195 ntBASIC21.18■□□□□ 0.98
HMGB4Q8WW32 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGB4Q8WW32 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 ESRRAP1-201ENST00000400596 1257 ntBASIC21.17■□□□□ 0.98
HMGB4Q8WW32 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.17■□□□□ 0.98
HMGB4Q8WW32 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGB4Q8WW32 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 AC243732.1-201ENST00000612648 864 ntBASIC21.16■□□□□ 0.98
HMGB4Q8WW32 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGB4Q8WW32 AC003102.1-202ENST00000563394 1796 ntBASIC21.15■□□□□ 0.98
HMGB4Q8WW32 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.15■□□□□ 0.98
HMGB4Q8WW32 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.15■□□□□ 0.98
HMGB4Q8WW32 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGB4Q8WW32 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB4Q8WW32 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGB4Q8WW32 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.14■□□□□ 0.98
HMGB4Q8WW32 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 RPS2P52-201ENST00000469610 820 ntBASIC21.14■□□□□ 0.97
HMGB4Q8WW32 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGB4Q8WW32 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms