Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN1BQ07699 AL020996.1-203ENST00000536896 2307 ntBASIC18.68■□□□□ 0.58
SCN1BQ07699 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 AC009102.2-201ENST00000606772 1639 ntBASIC18.68■□□□□ 0.58
SCN1BQ07699 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN1BQ07699 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.68■□□□□ 0.58
SCN1BQ07699 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SCN1BQ07699 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SCN1BQ07699 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.68■□□□□ 0.58
SCN1BQ07699 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SCN1BQ07699 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SCN1BQ07699 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.67■□□□□ 0.58
SCN1BQ07699 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.67■□□□□ 0.58
SCN1BQ07699 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SCN1BQ07699 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SCN1BQ07699 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SCN1BQ07699 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN1BQ07699 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 AC087289.5-201ENST00000586076 3175 ntBASIC18.66■□□□□ 0.58
SCN1BQ07699 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 UNC93B8-201ENST00000511903 705 ntBASIC18.66■□□□□ 0.58
SCN1BQ07699 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN1BQ07699 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.66■□□□□ 0.58
SCN1BQ07699 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SCN1BQ07699 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.66■□□□□ 0.58
SCN1BQ07699 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SCN1BQ07699 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN1BQ07699 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN1BQ07699 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.65■□□□□ 0.58
SCN1BQ07699 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SCN1BQ07699 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SCN1BQ07699 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.65■□□□□ 0.58
SCN1BQ07699 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SCN1BQ07699 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.64■□□□□ 0.58
SCN1BQ07699 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SCN1BQ07699 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.64■□□□□ 0.58
SCN1BQ07699 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.64■□□□□ 0.58
SCN1BQ07699 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SCN1BQ07699 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN1BQ07699 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.64■□□□□ 0.57
SCN1BQ07699 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.64■□□□□ 0.57
SCN1BQ07699 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SCN1BQ07699 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.57
SCN1BQ07699 GABARAPL3-202ENST00000624044 1851 ntBASIC18.64■□□□□ 0.57
SCN1BQ07699 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.64■□□□□ 0.57
SCN1BQ07699 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
SCN1BQ07699 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SCN1BQ07699 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN1BQ07699 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN1BQ07699 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN1BQ07699 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN1BQ07699 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN1BQ07699 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.63■□□□□ 0.57
SCN1BQ07699 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SCN1BQ07699 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SCN1BQ07699 KRT16P3-201ENST00000439127 1283 ntBASIC18.63■□□□□ 0.57
SCN1BQ07699 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.63■□□□□ 0.57
SCN1BQ07699 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms