Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
YBX1P67809 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
YBX1P67809 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
YBX1P67809 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
YBX1P67809 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
YBX1P67809 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
YBX1P67809 AL157384.1-201ENST00000445995 2473 ntBASIC20.58■□□□□ 0.89
YBX1P67809 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.58■□□□□ 0.89
YBX1P67809 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.58■□□□□ 0.89
YBX1P67809 AL034346.1-201ENST00000568244 1277 ntBASIC20.58■□□□□ 0.89
YBX1P67809 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.58■□□□□ 0.89
YBX1P67809 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
YBX1P67809 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
YBX1P67809 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
YBX1P67809 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
YBX1P67809 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.58■□□□□ 0.88
YBX1P67809 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
YBX1P67809 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
YBX1P67809 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
YBX1P67809 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
YBX1P67809 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 Z98882.1-201ENST00000622160 2253 ntBASIC20.57■□□□□ 0.88
YBX1P67809 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.57■□□□□ 0.88
YBX1P67809 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.57■□□□□ 0.88
YBX1P67809 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
YBX1P67809 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.57■□□□□ 0.88
YBX1P67809 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
YBX1P67809 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
YBX1P67809 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
YBX1P67809 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.56■□□□□ 0.88
YBX1P67809 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
YBX1P67809 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.56■□□□□ 0.88
YBX1P67809 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
YBX1P67809 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.56■□□□□ 0.88
YBX1P67809 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.56■□□□□ 0.88
YBX1P67809 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.56■□□□□ 0.88
YBX1P67809 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.56■□□□□ 0.88
YBX1P67809 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
YBX1P67809 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
YBX1P67809 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
YBX1P67809 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
YBX1P67809 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
YBX1P67809 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.55■□□□□ 0.88
YBX1P67809 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.55■□□□□ 0.88
YBX1P67809 FEM1AP4-201ENST00000443167 1987 ntBASIC20.55■□□□□ 0.88
YBX1P67809 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
YBX1P67809 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
YBX1P67809 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
YBX1P67809 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
YBX1P67809 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.54■□□□□ 0.88
YBX1P67809 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.54■□□□□ 0.88
YBX1P67809 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.54■□□□□ 0.88
YBX1P67809 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
YBX1P67809 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
YBX1P67809 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
YBX1P67809 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.54■□□□□ 0.88
YBX1P67809 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.54■□□□□ 0.88
YBX1P67809 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.54■□□□□ 0.88
YBX1P67809 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
YBX1P67809 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
YBX1P67809 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.54■□□□□ 0.88
YBX1P67809 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
YBX1P67809 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
YBX1P67809 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.53■□□□□ 0.88
YBX1P67809 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
YBX1P67809 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
YBX1P67809 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.53■□□□□ 0.88
YBX1P67809 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.53■□□□□ 0.88
YBX1P67809 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
YBX1P67809 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.53■□□□□ 0.88
YBX1P67809 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
YBX1P67809 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
YBX1P67809 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
YBX1P67809 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms