Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.98■□□□□ 0.63
LSM3P62310 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM3P62310 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 C17orf82-201ENST00000623772 1530 ntBASIC18.98■□□□□ 0.63
LSM3P62310 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM3P62310 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM3P62310 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LSM3P62310 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
LSM3P62310 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM3P62310 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM3P62310 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM3P62310 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
LSM3P62310 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LSM3P62310 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM3P62310 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
LSM3P62310 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM3P62310 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LSM3P62310 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LSM3P62310 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.96■□□□□ 0.63
LSM3P62310 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.96■□□□□ 0.63
LSM3P62310 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LSM3P62310 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM3P62310 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LSM3P62310 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 GPX1-201ENST00000419349 1106 ntBASIC18.95■□□□□ 0.62
LSM3P62310 AC120024.1-201ENST00000562672 995 ntBASIC18.95■□□□□ 0.62
LSM3P62310 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LSM3P62310 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
LSM3P62310 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LSM3P62310 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.95■□□□□ 0.62
LSM3P62310 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.95■□□□□ 0.62
LSM3P62310 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LSM3P62310 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM3P62310 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.95■□□□□ 0.62
LSM3P62310 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LSM3P62310 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LSM3P62310 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LSM3P62310 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM3P62310 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LSM3P62310 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
LSM3P62310 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
LSM3P62310 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.93■□□□□ 0.62
LSM3P62310 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.93■□□□□ 0.62
LSM3P62310 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LSM3P62310 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
LSM3P62310 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.93■□□□□ 0.62
LSM3P62310 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms