Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
PKNOX1P55347 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.62■□□□□ 0.89
PKNOX1P55347 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PKNOX1P55347 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
PKNOX1P55347 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
PKNOX1P55347 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PKNOX1P55347 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.61■□□□□ 0.89
PKNOX1P55347 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.61■□□□□ 0.89
PKNOX1P55347 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.61■□□□□ 0.89
PKNOX1P55347 AP006587.3-201ENST00000525742 1516 ntBASIC20.61■□□□□ 0.89
PKNOX1P55347 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
PKNOX1P55347 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.6■□□□□ 0.89
PKNOX1P55347 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PKNOX1P55347 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.6■□□□□ 0.89
PKNOX1P55347 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.6■□□□□ 0.89
PKNOX1P55347 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PKNOX1P55347 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
PKNOX1P55347 AC133561.4-201ENST00000566112 224 ntBASIC20.59■□□□□ 0.89
PKNOX1P55347 MIR4767-201ENST00000582827 78 ntBASIC20.59■□□□□ 0.89
PKNOX1P55347 SMUG1P1-201ENST00000590640 811 ntBASIC20.59■□□□□ 0.89
PKNOX1P55347 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.59■□□□□ 0.89
PKNOX1P55347 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PKNOX1P55347 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PKNOX1P55347 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.89
PKNOX1P55347 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.89
PKNOX1P55347 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 UNC93B3-201ENST00000308076 687 ntBASIC20.58■□□□□ 0.89
PKNOX1P55347 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.58■□□□□ 0.89
PKNOX1P55347 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.58■□□□□ 0.89
PKNOX1P55347 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PKNOX1P55347 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.58■□□□□ 0.88
PKNOX1P55347 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.58■□□□□ 0.88
PKNOX1P55347 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PKNOX1P55347 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PKNOX1P55347 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.57■□□□□ 0.88
PKNOX1P55347 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.57■□□□□ 0.88
PKNOX1P55347 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PKNOX1P55347 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.57■□□□□ 0.88
PKNOX1P55347 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.57■□□□□ 0.88
PKNOX1P55347 AC233992.3-201ENST00000607491 485 ntBASIC20.57■□□□□ 0.88
PKNOX1P55347 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PKNOX1P55347 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PKNOX1P55347 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PKNOX1P55347 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PKNOX1P55347 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PKNOX1P55347 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PKNOX1P55347 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms