Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
CDH4P55283 KRT16P2-201ENST00000414673 1423 ntBASIC21.62■■□□□ 1.05
CDH4P55283 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CDH4P55283 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.61■■□□□ 1.05
CDH4P55283 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 AC080038.1-201ENST00000611274 1154 ntBASIC21.61■■□□□ 1.05
CDH4P55283 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CDH4P55283 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDH4P55283 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.6■■□□□ 1.05
CDH4P55283 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 MFSD11-216ENST00000590393 1141 ntBASIC21.6■■□□□ 1.05
CDH4P55283 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.6■■□□□ 1.05
CDH4P55283 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CDH4P55283 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CDH4P55283 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.6■■□□□ 1.05
CDH4P55283 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH4P55283 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
CDH4P55283 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.59■■□□□ 1.05
CDH4P55283 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH4P55283 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH4P55283 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
CDH4P55283 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CDH4P55283 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
CDH4P55283 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH4P55283 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CDH4P55283 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.59■■□□□ 1.05
CDH4P55283 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
CDH4P55283 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH4P55283 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH4P55283 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.58■■□□□ 1.05
CDH4P55283 RARRES2P11-201ENST00000635158 484 ntBASIC21.58■■□□□ 1.05
CDH4P55283 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH4P55283 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CDH4P55283 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.58■■□□□ 1.04
CDH4P55283 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CDH4P55283 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.58■■□□□ 1.04
CDH4P55283 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.58■■□□□ 1.04
CDH4P55283 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.57■■□□□ 1.04
CDH4P55283 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CDH4P55283 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.57■■□□□ 1.04
CDH4P55283 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.57■■□□□ 1.04
CDH4P55283 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH4P55283 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CDH4P55283 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.57■■□□□ 1.04
CDH4P55283 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.57■■□□□ 1.04
CDH4P55283 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.57■■□□□ 1.04
CDH4P55283 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CDH4P55283 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH4P55283 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.57■■□□□ 1.04
CDH4P55283 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH4P55283 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH4P55283 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.57■■□□□ 1.04
CDH4P55283 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CDH4P55283 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDH4P55283 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.56■■□□□ 1.04
CDH4P55283 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.56■■□□□ 1.04
CDH4P55283 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CDH4P55283 AC073111.5-205ENST00000641717 521 ntBASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms