Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.55■■□□□ 1.2
VCPP55072 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 POU5F1P3-201ENST00000428824 1078 ntBASIC22.55■■□□□ 1.2
VCPP55072 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.55■■□□□ 1.2
VCPP55072 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.55■■□□□ 1.2
VCPP55072 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
VCPP55072 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.55■■□□□ 1.2
VCPP55072 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
VCPP55072 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.54■■□□□ 1.2
VCPP55072 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.54■■□□□ 1.2
VCPP55072 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.54■■□□□ 1.2
VCPP55072 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
VCPP55072 SLC29A4P1-201ENST00000398760 971 ntBASIC22.54■■□□□ 1.2
VCPP55072 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
VCPP55072 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.54■■□□□ 1.2
VCPP55072 ITM2C-210ENST00000620962 501 ntBASIC22.54■■□□□ 1.2
VCPP55072 AC068587.7-201ENST00000641602 218 ntBASIC22.54■■□□□ 1.2
VCPP55072 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.54■■□□□ 1.2
VCPP55072 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VCPP55072 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
VCPP55072 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.53■■□□□ 1.2
VCPP55072 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.53■■□□□ 1.2
VCPP55072 KRT18P29-201ENST00000397031 1267 ntBASIC22.53■■□□□ 1.2
VCPP55072 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.53■■□□□ 1.2
VCPP55072 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCPP55072 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VCPP55072 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VCPP55072 PRORSD1P-201ENST00000295112 541 ntBASIC22.52■■□□□ 1.2
VCPP55072 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
VCPP55072 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.52■■□□□ 1.2
VCPP55072 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.52■■□□□ 1.2
VCPP55072 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.52■■□□□ 1.2
VCPP55072 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.52■■□□□ 1.2
VCPP55072 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.52■■□□□ 1.2
VCPP55072 AC005181.1-201ENST00000604782 1256 ntBASIC22.52■■□□□ 1.2
VCPP55072 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VCPP55072 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VCPP55072 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
VCPP55072 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
VCPP55072 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
VCPP55072 RPS2P52-201ENST00000469610 820 ntBASIC22.51■■□□□ 1.19
VCPP55072 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.51■■□□□ 1.19
VCPP55072 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
VCPP55072 AC098934.4-201ENST00000564127 592 ntBASIC22.51■■□□□ 1.19
VCPP55072 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
VCPP55072 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VCPP55072 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
VCPP55072 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.5■■□□□ 1.19
VCPP55072 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
VCPP55072 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.5■■□□□ 1.19
VCPP55072 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.5■■□□□ 1.19
VCPP55072 SMUG1P1-201ENST00000590640 811 ntBASIC22.5■■□□□ 1.19
VCPP55072 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
VCPP55072 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCPP55072 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
VCPP55072 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.5■■□□□ 1.19
VCPP55072 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
VCPP55072 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.5■■□□□ 1.19
VCPP55072 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
VCPP55072 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
VCPP55072 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
VCPP55072 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
VCPP55072 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.49■■□□□ 1.19
VCPP55072 AC133041.1-202ENST00000642053 222 ntBASIC22.49■■□□□ 1.19
VCPP55072 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.49■■□□□ 1.19
VCPP55072 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.49■■□□□ 1.19
VCPP55072 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VCPP55072 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
VCPP55072 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VCPP55072 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VCPP55072 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.48■■□□□ 1.19
VCPP55072 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VCPP55072 OXCT2P1-201ENST00000447263 1535 ntBASIC22.48■■□□□ 1.19
VCPP55072 BX005040.4-201ENST00000637145 1518 ntBASIC22.48■■□□□ 1.19
VCPP55072 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms