Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
RFC3P40938 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.28■□□□□ 0.68
RFC3P40938 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RFC3P40938 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RFC3P40938 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RFC3P40938 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.27■□□□□ 0.68
RFC3P40938 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.27■□□□□ 0.68
RFC3P40938 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.27■□□□□ 0.68
RFC3P40938 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.27■□□□□ 0.68
RFC3P40938 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RFC3P40938 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
RFC3P40938 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RFC3P40938 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.26■□□□□ 0.67
RFC3P40938 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
RFC3P40938 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFC3P40938 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RFC3P40938 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.26■□□□□ 0.67
RFC3P40938 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.26■□□□□ 0.67
RFC3P40938 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.26■□□□□ 0.67
RFC3P40938 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.26■□□□□ 0.67
RFC3P40938 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFC3P40938 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFC3P40938 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 AC092053.2-201ENST00000640557 1818 ntBASIC19.25■□□□□ 0.67
RFC3P40938 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.25■□□□□ 0.67
RFC3P40938 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 SLC25A24-204ENST00000569674 2357 ntBASIC19.25■□□□□ 0.67
RFC3P40938 AC003102.1-202ENST00000563394 1796 ntBASIC19.25■□□□□ 0.67
RFC3P40938 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.25■□□□□ 0.67
RFC3P40938 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RFC3P40938 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 CNN2P6-201ENST00000439038 900 ntBASIC19.25■□□□□ 0.67
RFC3P40938 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 KRT18P20-201ENST00000548986 1279 ntBASIC19.25■□□□□ 0.67
RFC3P40938 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.25■□□□□ 0.67
RFC3P40938 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
RFC3P40938 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RFC3P40938 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.25■□□□□ 0.67
RFC3P40938 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFC3P40938 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.24■□□□□ 0.67
RFC3P40938 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.24■□□□□ 0.67
RFC3P40938 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFC3P40938 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.24■□□□□ 0.67
RFC3P40938 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.24■□□□□ 0.67
RFC3P40938 AC083906.2-201ENST00000511578 360 ntBASIC19.24■□□□□ 0.67
RFC3P40938 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.24■□□□□ 0.67
RFC3P40938 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFC3P40938 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.24■□□□□ 0.67
RFC3P40938 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.24■□□□□ 0.67
RFC3P40938 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.24■□□□□ 0.67
RFC3P40938 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFC3P40938 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFC3P40938 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
RFC3P40938 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.24■□□□□ 0.67
RFC3P40938 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFC3P40938 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RFC3P40938 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.23■□□□□ 0.67
RFC3P40938 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
RFC3P40938 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
RFC3P40938 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.23■□□□□ 0.67
RFC3P40938 AL121832.2-201ENST00000610979 668 ntBASIC19.23■□□□□ 0.67
RFC3P40938 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms