Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USF1P22415 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USF1P22415 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.81■□□□□ 0.44
USF1P22415 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
USF1P22415 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
USF1P22415 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.81■□□□□ 0.44
USF1P22415 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
USF1P22415 TSPY20P-201ENST00000450910 630 ntBASIC17.81■□□□□ 0.44
USF1P22415 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.81■□□□□ 0.44
USF1P22415 AL138781.1-201ENST00000566567 1274 ntBASIC17.81■□□□□ 0.44
USF1P22415 AC105036.2-201ENST00000569468 176 ntBASIC17.81■□□□□ 0.44
USF1P22415 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.81■□□□□ 0.44
USF1P22415 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USF1P22415 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USF1P22415 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USF1P22415 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.8■□□□□ 0.44
USF1P22415 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 CNN2P6-201ENST00000439038 900 ntBASIC17.8■□□□□ 0.44
USF1P22415 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.8■□□□□ 0.44
USF1P22415 AC133552.2-202ENST00000575694 574 ntBASIC17.8■□□□□ 0.44
USF1P22415 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.8■□□□□ 0.44
USF1P22415 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USF1P22415 AC133041.1-202ENST00000642053 222 ntBASIC17.8■□□□□ 0.44
USF1P22415 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.8■□□□□ 0.44
USF1P22415 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.8■□□□□ 0.44
USF1P22415 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.8■□□□□ 0.44
USF1P22415 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.8■□□□□ 0.44
USF1P22415 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
USF1P22415 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USF1P22415 ECEL1P1-201ENST00000373592 1742 ntBASIC17.79■□□□□ 0.44
USF1P22415 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
USF1P22415 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.79■□□□□ 0.44
USF1P22415 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.79■□□□□ 0.44
USF1P22415 AC013268.1-206ENST00000638368 961 ntBASIC17.79■□□□□ 0.44
USF1P22415 AC112229.1-201ENST00000639295 961 ntBASIC17.79■□□□□ 0.44
USF1P22415 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.79■□□□□ 0.44
USF1P22415 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.79■□□□□ 0.44
USF1P22415 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USF1P22415 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.79■□□□□ 0.44
USF1P22415 AC127496.7-201ENST00000625110 1798 ntBASIC17.79■□□□□ 0.44
USF1P22415 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
USF1P22415 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.78■□□□□ 0.44
USF1P22415 AC069152.1-201ENST00000438030 544 ntBASIC17.78■□□□□ 0.44
USF1P22415 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
USF1P22415 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
USF1P22415 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USF1P22415 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 AC242852.2-201ENST00000615738 1807 ntBASIC17.77■□□□□ 0.44
USF1P22415 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.77■□□□□ 0.44
USF1P22415 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.77■□□□□ 0.44
USF1P22415 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USF1P22415 SLC7A5P1-201ENST00000568957 537 ntBASIC17.77■□□□□ 0.44
USF1P22415 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
USF1P22415 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.77■□□□□ 0.44
USF1P22415 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
USF1P22415 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.76■□□□□ 0.43
USF1P22415 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 LINC00526-201ENST00000581067 1875 ntBASIC17.76■□□□□ 0.43
USF1P22415 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USF1P22415 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
USF1P22415 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USF1P22415 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms