Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
COL4A2P08572 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.5■■□□□ 1.03
COL4A2P08572 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.5■■□□□ 1.03
COL4A2P08572 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.5■■□□□ 1.03
COL4A2P08572 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
COL4A2P08572 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL4A2P08572 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A2P08572 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.49■■□□□ 1.03
COL4A2P08572 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.49■■□□□ 1.03
COL4A2P08572 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.49■■□□□ 1.03
COL4A2P08572 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.49■■□□□ 1.03
COL4A2P08572 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A2P08572 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL4A2P08572 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A2P08572 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A2P08572 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A2P08572 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A2P08572 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.49■■□□□ 1.03
COL4A2P08572 AC073648.6-201ENST00000641589 218 ntBASIC21.49■■□□□ 1.03
COL4A2P08572 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
COL4A2P08572 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL4A2P08572 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.48■■□□□ 1.03
COL4A2P08572 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A2P08572 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A2P08572 CYP2T3P-201ENST00000601990 817 ntBASIC21.48■■□□□ 1.03
COL4A2P08572 AL359736.2-201ENST00000621992 437 ntBASIC21.48■■□□□ 1.03
COL4A2P08572 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A2P08572 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
COL4A2P08572 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A2P08572 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A2P08572 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
COL4A2P08572 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
COL4A2P08572 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A2P08572 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL4A2P08572 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A2P08572 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A2P08572 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A2P08572 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.47■■□□□ 1.03
COL4A2P08572 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.47■■□□□ 1.03
COL4A2P08572 FAM21FP-204ENST00000608637 956 ntBASIC21.47■■□□□ 1.03
COL4A2P08572 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL4A2P08572 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A2P08572 AC003102.1-202ENST00000563394 1796 ntBASIC21.47■■□□□ 1.03
COL4A2P08572 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.46■■□□□ 1.03
COL4A2P08572 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.46■■□□□ 1.03
COL4A2P08572 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A2P08572 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A2P08572 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A2P08572 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A2P08572 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.45■■□□□ 1.02
COL4A2P08572 AP006294.2-201ENST00000641667 209 ntBASIC21.45■■□□□ 1.02
COL4A2P08572 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A2P08572 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.45■■□□□ 1.02
COL4A2P08572 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A2P08572 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.44■■□□□ 1.02
COL4A2P08572 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL4A2P08572 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A2P08572 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
COL4A2P08572 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.43■■□□□ 1.02
COL4A2P08572 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A2P08572 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms