Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPTA1P02549 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SPTA1P02549 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.23■□□□□ 0.67
SPTA1P02549 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.23■□□□□ 0.67
SPTA1P02549 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SPTA1P02549 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.22■□□□□ 0.67
SPTA1P02549 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.22■□□□□ 0.67
SPTA1P02549 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.22■□□□□ 0.67
SPTA1P02549 C1QBPP2-201ENST00000528754 825 ntBASIC19.22■□□□□ 0.67
SPTA1P02549 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.22■□□□□ 0.67
SPTA1P02549 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.22■□□□□ 0.67
SPTA1P02549 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
SPTA1P02549 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 AP006587.3-201ENST00000525742 1516 ntBASIC19.22■□□□□ 0.67
SPTA1P02549 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SPTA1P02549 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SPTA1P02549 RCN1P1-201ENST00000400413 996 ntBASIC19.22■□□□□ 0.67
SPTA1P02549 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.22■□□□□ 0.67
SPTA1P02549 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.22■□□□□ 0.67
SPTA1P02549 AC008403.3-201ENST00000598924 454 ntBASIC19.22■□□□□ 0.67
SPTA1P02549 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.21■□□□□ 0.67
SPTA1P02549 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.21■□□□□ 0.67
SPTA1P02549 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPTA1P02549 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPTA1P02549 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPTA1P02549 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
SPTA1P02549 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SPTA1P02549 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SPTA1P02549 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SPTA1P02549 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.21■□□□□ 0.67
SPTA1P02549 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.21■□□□□ 0.67
SPTA1P02549 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.21■□□□□ 0.67
SPTA1P02549 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.21■□□□□ 0.67
SPTA1P02549 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.21■□□□□ 0.67
SPTA1P02549 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.21■□□□□ 0.67
SPTA1P02549 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SPTA1P02549 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SPTA1P02549 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SPTA1P02549 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.2■□□□□ 0.66
SPTA1P02549 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.2■□□□□ 0.66
SPTA1P02549 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 PNMA6B-201ENST00000538162 1200 ntBASIC19.2■□□□□ 0.66
SPTA1P02549 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.2■□□□□ 0.66
SPTA1P02549 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.2■□□□□ 0.66
SPTA1P02549 AC233263.1-201ENST00000578059 224 ntBASIC19.2■□□□□ 0.66
SPTA1P02549 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SPTA1P02549 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SPTA1P02549 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPTA1P02549 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
SPTA1P02549 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.19■□□□□ 0.66
SPTA1P02549 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.19■□□□□ 0.66
SPTA1P02549 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPTA1P02549 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.19■□□□□ 0.66
SPTA1P02549 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SPTA1P02549 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.19■□□□□ 0.66
SPTA1P02549 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SPTA1P02549 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SPTA1P02549 AL049637.2-201ENST00000641778 930 ntBASIC19.19■□□□□ 0.66
SPTA1P02549 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
SPTA1P02549 KRT17P1-201ENST00000399211 1546 ntBASIC19.18■□□□□ 0.66
SPTA1P02549 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SPTA1P02549 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.18■□□□□ 0.66
SPTA1P02549 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 AL589743.5-201ENST00000616611 1050 ntBASIC19.18■□□□□ 0.66
SPTA1P02549 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.18■□□□□ 0.66
SPTA1P02549 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.18■□□□□ 0.66
SPTA1P02549 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SPTA1P02549 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms