Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CACNA1FO60840 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CACNA1FO60840 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CACNA1FO60840 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CACNA1FO60840 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CACNA1FO60840 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
CACNA1FO60840 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC26.78■■□□□ 1.88
CACNA1FO60840 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC26.78■■□□□ 1.88
CACNA1FO60840 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.78■■□□□ 1.88
CACNA1FO60840 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
CACNA1FO60840 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CACNA1FO60840 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CACNA1FO60840 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CACNA1FO60840 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
CACNA1FO60840 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.77■■□□□ 1.88
CACNA1FO60840 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.77■■□□□ 1.88
CACNA1FO60840 MAZ-216ENST00000616501 991 ntTSL 5 BASIC26.77■■□□□ 1.88
CACNA1FO60840 AL050303.2-201ENST00000619798 666 ntBASIC26.77■■□□□ 1.88
CACNA1FO60840 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC26.76■■□□□ 1.87
CACNA1FO60840 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
CACNA1FO60840 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.76■■□□□ 1.87
CACNA1FO60840 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CACNA1FO60840 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.76■■□□□ 1.87
CACNA1FO60840 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC26.75■■□□□ 1.87
CACNA1FO60840 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 AL162412.1-201ENST00000567129 965 ntBASIC26.75■■□□□ 1.87
CACNA1FO60840 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.75■■□□□ 1.87
CACNA1FO60840 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
CACNA1FO60840 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC26.75■■□□□ 1.87
CACNA1FO60840 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.75■■□□□ 1.87
CACNA1FO60840 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
CACNA1FO60840 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.75■■□□□ 1.87
CACNA1FO60840 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC26.75■■□□□ 1.87
CACNA1FO60840 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CACNA1FO60840 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
CACNA1FO60840 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 CYP2T1P-201ENST00000432607 1285 ntBASIC26.74■■□□□ 1.87
CACNA1FO60840 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC26.74■■□□□ 1.87
CACNA1FO60840 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC26.74■■□□□ 1.87
CACNA1FO60840 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CACNA1FO60840 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.74■■□□□ 1.87
CACNA1FO60840 BID-212ENST00000614949 1988 ntTSL 5 BASIC26.74■■□□□ 1.87
CACNA1FO60840 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 METTL26-203ENST00000397664 604 ntTSL 2 BASIC26.73■■□□□ 1.87
CACNA1FO60840 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 AC011767.1-201ENST00000617410 1153 ntBASIC26.73■■□□□ 1.87
CACNA1FO60840 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.73■■□□□ 1.87
CACNA1FO60840 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
CACNA1FO60840 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CACNA1FO60840 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.72■■□□□ 1.87
CACNA1FO60840 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CACNA1FO60840 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 AC068338.2-201ENST00000563278 1430 ntBASIC26.72■■□□□ 1.87
CACNA1FO60840 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.72■■□□□ 1.87
CACNA1FO60840 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
CACNA1FO60840 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.72■■□□□ 1.87
CACNA1FO60840 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CACNA1FO60840 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CACNA1FO60840 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
CACNA1FO60840 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC26.71■■□□□ 1.87
CACNA1FO60840 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.71■■□□□ 1.87
CACNA1FO60840 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.71■■□□□ 1.87
CACNA1FO60840 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CACNA1FO60840 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
CACNA1FO60840 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.71■■□□□ 1.87
CACNA1FO60840 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CACNA1FO60840 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.71■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms