Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.18■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC026471.6-201ENST00000622954 1905 ntBASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 SLC29A4P1-201ENST00000398760 971 ntBASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AF201337.1-201ENST00000520239 748 ntBASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC010542.4-201ENST00000563151 1910 ntBASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC068338.2-201ENST00000563278 1430 ntBASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CYP2T1P-201ENST00000432607 1285 ntBASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 TSPY6P-201ENST00000448518 926 ntBASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC133552.2-202ENST00000575694 574 ntBASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC105036.2-201ENST00000569468 176 ntBASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 AC008694.1-202ENST00000636953 945 ntBASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 RBM17P2-201ENST00000616397 1405 ntBASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
C1QTNF3-AMACRE9PGA6 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 AC069236.1-201ENST00000604339 616 ntBASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 AC243732.1-201ENST00000612648 864 ntBASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 AC233723.2-201ENST00000623798 2106 ntBASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 GUSBP5-202ENST00000510805 1989 ntBASIC21.14■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.12■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
C1QTNF3-AMACRE9PGA6 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms