Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 CYP2T1P-201ENST00000432607 1285 ntBASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 TERF1P5-201ENST00000477545 1207 ntBASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRAV40A0A0B4J280 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 TSPY6P-201ENST00000448518 926 ntBASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRAV40A0A0B4J280 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 AF201337.1-201ENST00000520239 748 ntBASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRAV40A0A0B4J280 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 AC068473.5-201ENST00000616428 2072 ntBASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 AC079834.2-201ENST00000609776 1949 ntBASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 AC105036.2-201ENST00000569468 176 ntBASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TRAV40A0A0B4J280 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 KRT16P2-201ENST00000414673 1423 ntBASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.15■□□□□ 0.34
TRAV40A0A0B4J280 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms