Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDHGA3Q9Y5H0 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 AL121832.2-201ENST00000610979 668 ntBASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHGA3Q9Y5H0 AC055733.4-201ENST00000638462 1354 ntBASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 AP001160.3-201ENST00000601484 763 ntBASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.46■□□□□ 0.87
PCDHGA3Q9Y5H0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
PCDHGA3Q9Y5H0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 ABHD17AP1-201ENST00000358206 933 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 AC007322.1-201ENST00000426983 750 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 AC079089.2-201ENST00000531211 1277 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 UBE2DNL-204ENST00000602536 740 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 AL050303.2-201ENST00000619798 666 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 MYCNOS-205ENST00000641950 531 ntBASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PCDHGA3Q9Y5H0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
PCDHGA3Q9Y5H0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 TSPY6P-201ENST00000448518 926 ntBASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 AC083906.2-201ENST00000511578 360 ntBASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 AC005181.1-201ENST00000604782 1256 ntBASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHGA3Q9Y5H0 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms