Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 AC016769.1-201ENST00000409132 1010 ntBASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHB3Q9Y5E6 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHB3Q9Y5E6 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
PCDHB3Q9Y5E6 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
PCDHB3Q9Y5E6 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 AC137761.2-201ENST00000561729 223 ntBASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 AC145350.3-201ENST00000569033 163 ntBASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHB3Q9Y5E6 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 AC244015.2-201ENST00000616358 1861 ntBASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 PKD1P6-201ENST00000343738 4769 ntBASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHB3Q9Y5E6 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHB3Q9Y5E6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms